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Cluster: HRGMv2_1781_CGC56

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1781_13 HRGMv2_1781_13_116 126571 128073 + 2.A.1.6.4
pfam HRGMv2_1781_13 HRGMv2_1781_13_117 128195 128500 - MerR_2
pfam HRGMv2_1781_13 HRGMv2_1781_13_118 128500 129420 - DnaJ | DnaJ_C
TC HRGMv2_1781_13 HRGMv2_1781_13_119 129570 130250 - 2.A.109.1.5
pfam HRGMv2_1781_13 HRGMv2_1781_13_120 130475 131257 + DSBA | Thioredoxin_4 | ScsC_N
STP HRGMv2_1781_13 HRGMv2_1781_13_121 131294 131890 - TetR_N
TC HRGMv2_1781_13 HRGMv2_1781_13_122 132006 132593 + 2.A.37.1.1
NULL(UNKNOWN) HRGMv2_1781_13 HRGMv2_1781_13_123 132739 133134 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1781_13 HRGMv2_1781_13_124 133169 133978 - PS_pyruv_trans
CAZyme HRGMv2_1781_13 HRGMv2_1781_13_125 134078 136300 + GT2
pfam HRGMv2_1781_13 HRGMv2_1781_13_126 136792 138879 - DUF1176
NULL(UNKNOWN) HRGMv2_1781_13 HRGMv2_1781_13_127 138947 139537 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1781_13 HRGMv2_1781_13_128 139558 141315 - 5.A.1.1.1
pfam HRGMv2_1781_13 HRGMv2_1781_13_129 141291 141614 - CutA1
TC HRGMv2_1781_13 HRGMv2_1781_13_130 141709 143010 - 2.A.13.1.1
pfam HRGMv2_1781_13 HRGMv2_1781_13_131 143129 144565 - Lyase_1 | FumaraseC_C
pfam HRGMv2_1781_13 HRGMv2_1781_13_132 144904 145380 + FxsA
TC HRGMv2_1781_13 HRGMv2_1781_13_133 145396 146655 - 2.A.3.13.1
Gene ID: HRGMv2_1781_13_116
Type: TC
Location: 126571 - 128073 (+)
Gene ID: HRGMv2_1781_13_117
Type: pfam
Location: 128195 - 128500 (-)
Gene ID: HRGMv2_1781_13_118
Type: pfam
Location: 128500 - 129420 (-)
Gene ID: HRGMv2_1781_13_119
Type: TC
Location: 129570 - 130250 (-)
Gene ID: HRGMv2_1781_13_120
Type: pfam
Location: 130475 - 131257 (+)
Gene ID: HRGMv2_1781_13_121
Type: STP
Location: 131294 - 131890 (-)
Gene ID: HRGMv2_1781_13_122
Type: TC
Location: 132006 - 132593 (+)
Gene ID: HRGMv2_1781_13_123
Type:
Location: 132739 - 133134 (+)
Gene ID: HRGMv2_1781_13_124
Type: pfam
Location: 133169 - 133978 (-)
Gene ID: HRGMv2_1781_13_125
Type: CAZyme
Location: 134078 - 136300 (+)
Gene ID: HRGMv2_1781_13_126
Type: pfam
Location: 136792 - 138879 (-)
Gene ID: HRGMv2_1781_13_127
Type:
Location: 138947 - 139537 (-)
Gene ID: HRGMv2_1781_13_128
Type: TC
Location: 139558 - 141315 (-)
Gene ID: HRGMv2_1781_13_129
Type: pfam
Location: 141291 - 141614 (-)
Gene ID: HRGMv2_1781_13_130
Type: TC
Location: 141709 - 143010 (-)
Gene ID: HRGMv2_1781_13_131
Type: pfam
Location: 143129 - 144565 (-)
Gene ID: HRGMv2_1781_13_132
Type: pfam
Location: 144904 - 145380 (+)
Gene ID: HRGMv2_1781_13_133
Type: TC
Location: 145396 - 146655 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1781_13_130 vegetarian > omnivore 1.63262 0.04336
HRGMv2_1781_13_132 vegetarian > omnivore 1.70689 0.02188
HRGMv2_1781_13_133 vegetarian > omnivore 1.85610 0.02860

🧭 Explore Read Mapping of CGC

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