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Cluster: HRGMv2_1781_CGC49

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1781_10 HRGMv2_1781_10_163 178493 179524 + 9.B.126.1.1
TC HRGMv2_1781_10 HRGMv2_1781_10_164 179795 181117 + 2.A.1.6.10
TC HRGMv2_1781_10 HRGMv2_1781_10_165 181167 183218 - 9.B.121.1.1
STP HRGMv2_1781_10 HRGMv2_1781_10_166 183414 184349 + PfkB
peptidase HRGMv2_1781_10 HRGMv2_1781_10_167 184533 186038 - M16.UNW
TC HRGMv2_1781_10 HRGMv2_1781_10_168 186260 187546 - 2.A.23.1.7
STP HRGMv2_1781_10 HRGMv2_1781_10_169 187701 189707 - EAL | GGDEF
TC HRGMv2_1781_10 HRGMv2_1781_10_170 190145 193630 - 1.B.55.3.1
CAZyme HRGMv2_1781_10 HRGMv2_1781_10_171 193612 194721 - GH8
TC HRGMv2_1781_10 HRGMv2_1781_10_172 194725 197058 - 4.D.3.1.6
TC HRGMv2_1781_10 HRGMv2_1781_10_173 197069 197308 - 4.D.3.1.6
Gene ID: HRGMv2_1781_10_163
Type: TC
Location: 178493 - 179524 (+)
Gene ID: HRGMv2_1781_10_164
Type: TC
Location: 179795 - 181117 (+)
Gene ID: HRGMv2_1781_10_165
Type: TC
Location: 181167 - 183218 (-)
Gene ID: HRGMv2_1781_10_166
Type: STP
Location: 183414 - 184349 (+)
Gene ID: HRGMv2_1781_10_167
Type: peptidase
Location: 184533 - 186038 (-)
Gene ID: HRGMv2_1781_10_168
Type: TC
Location: 186260 - 187546 (-)
Gene ID: HRGMv2_1781_10_169
Type: STP
Location: 187701 - 189707 (-)
Gene ID: HRGMv2_1781_10_170
Type: TC
Location: 190145 - 193630 (-)
Gene ID: HRGMv2_1781_10_171
Type: CAZyme
Location: 193612 - 194721 (-)
Gene ID: HRGMv2_1781_10_172
Type: TC
Location: 194725 - 197058 (-)
Gene ID: HRGMv2_1781_10_173
Type: TC
Location: 197069 - 197308 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1781_10_169 vegetarian > omnivore 1.14261 0.04839

🧭 Explore Read Mapping of CGC

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