Cluster: HRGMv2_1781_CGC48
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1781
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1781_10 | HRGMv2_1781_10_101 | 112687 | 114891 | + | 3.A.3.6.2 |
| pfam | HRGMv2_1781_10 | HRGMv2_1781_10_102 | 115103 | 115348 | - | TusA |
| TC | HRGMv2_1781_10 | HRGMv2_1781_10_103 | 115515 | 116180 | + | 2.A.88.8.6 |
| pfam | HRGMv2_1781_10 | HRGMv2_1781_10_104 | 116254 | 116811 | + | DcrB |
| TC | HRGMv2_1781_10 | HRGMv2_1781_10_105 | 116812 | 118032 | - | 2.A.1.46.7 |
| TC | HRGMv2_1781_10 | HRGMv2_1781_10_106 | 118165 | 119214 | + | 2.A.86.1.2 |
| TC | HRGMv2_1781_10 | HRGMv2_1781_10_107 | 119211 | 119594 | - | 2.A.7.22.1 |
| TC | HRGMv2_1781_10 | HRGMv2_1781_10_108 | 119594 | 119932 | - | 2.A.7.22.2 |
| CAZyme | HRGMv2_1781_10 | HRGMv2_1781_10_109 | 119929 | 121584 | - | GT83 |
| pfam | HRGMv2_1781_10 | HRGMv2_1781_10_110 | 121584 | 122486 | - | Polysacc_deac_1 |
| pfam | HRGMv2_1781_10 | HRGMv2_1781_10_111 | 122483 | 124468 | - | Formyl_trans_N | 3Beta_HSD | Epimerase | Formyl_trans_C | GDP_Man_Dehyd |
| CAZyme | HRGMv2_1781_10 | HRGMv2_1781_10_112 | 124465 | 125448 | - | GT2 |
Gene ID: HRGMv2_1781_10_101
Type: TC
Location: 112687 - 114891 (+)
Type: TC
Location: 112687 - 114891 (+)
Gene ID: HRGMv2_1781_10_102
Type: pfam
Location: 115103 - 115348 (-)
Type: pfam
Location: 115103 - 115348 (-)
Gene ID: HRGMv2_1781_10_103
Type: TC
Location: 115515 - 116180 (+)
Type: TC
Location: 115515 - 116180 (+)
Gene ID: HRGMv2_1781_10_104
Type: pfam
Location: 116254 - 116811 (+)
Type: pfam
Location: 116254 - 116811 (+)
Gene ID: HRGMv2_1781_10_105
Type: TC
Location: 116812 - 118032 (-)
Type: TC
Location: 116812 - 118032 (-)
Gene ID: HRGMv2_1781_10_106
Type: TC
Location: 118165 - 119214 (+)
Type: TC
Location: 118165 - 119214 (+)
Gene ID: HRGMv2_1781_10_107
Type: TC
Location: 119211 - 119594 (-)
Type: TC
Location: 119211 - 119594 (-)
Gene ID: HRGMv2_1781_10_108
Type: TC
Location: 119594 - 119932 (-)
Type: TC
Location: 119594 - 119932 (-)
Gene ID: HRGMv2_1781_10_109
Type: CAZyme
Location: 119929 - 121584 (-)
Type: CAZyme
Location: 119929 - 121584 (-)
Gene ID: HRGMv2_1781_10_110
Type: pfam
Location: 121584 - 122486 (-)
Type: pfam
Location: 121584 - 122486 (-)
Gene ID: HRGMv2_1781_10_111
Type: pfam
Location: 122483 - 124468 (-)
Type: pfam
Location: 122483 - 124468 (-)
Gene ID: HRGMv2_1781_10_112
Type: CAZyme
Location: 124465 - 125448 (-)
Type: CAZyme
Location: 124465 - 125448 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Klebsiella
Species
Klebsiella grimontii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.