Cluster: HRGMv2_1781_CGC47
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_1781
- CGC Family ID: CGCFAM_00123
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1781_10 | HRGMv2_1781_10_50 | 49099 | 51192 | - | GH77 |
| CAZyme | HRGMv2_1781_10 | HRGMv2_1781_10_51 | 51203 | 53593 | - | GT35 |
| TF | HRGMv2_1781_10 | HRGMv2_1781_10_52 | 54213 | 56918 | + | GerE |
| TF | HRGMv2_1781_10 | HRGMv2_1781_10_53 | 57087 | 57845 | - | HTH_DeoR |
| TC | HRGMv2_1781_10 | HRGMv2_1781_10_54 | 57865 | 58695 | - | 9.B.104.1.1 |
| STP | HRGMv2_1781_10 | HRGMv2_1781_10_55 | 58755 | 59084 | - | Rhodanese |
| pfam | HRGMv2_1781_10 | HRGMv2_1781_10_56 | 59297 | 60784 | + | DAO | DAO_C |
| CAZyme | HRGMv2_1781_10 | HRGMv2_1781_10_57 | 60845 | 63292 | - | GT35 |
| CAZyme | HRGMv2_1781_10 | HRGMv2_1781_10_58 | 63308 | 64741 | - | GT5 |
| pfam | HRGMv2_1781_10 | HRGMv2_1781_10_59 | 64741 | 66036 | - | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| CAZyme | HRGMv2_1781_10 | HRGMv2_1781_10_60 | 66117 | 68093 | - | CBM48 | GH13_11 |
| CAZyme | HRGMv2_1781_10 | HRGMv2_1781_10_61 | 68090 | 70276 | - | CBM48 | GH13_9 |
Gene ID: HRGMv2_1781_10_50
Type: CAZyme
Location: 49099 - 51192 (-)
Type: CAZyme
Location: 49099 - 51192 (-)
Gene ID: HRGMv2_1781_10_51
Type: CAZyme
Location: 51203 - 53593 (-)
Type: CAZyme
Location: 51203 - 53593 (-)
Gene ID: HRGMv2_1781_10_52
Type: TF
Location: 54213 - 56918 (+)
Type: TF
Location: 54213 - 56918 (+)
Gene ID: HRGMv2_1781_10_53
Type: TF
Location: 57087 - 57845 (-)
Type: TF
Location: 57087 - 57845 (-)
Gene ID: HRGMv2_1781_10_54
Type: TC
Location: 57865 - 58695 (-)
Type: TC
Location: 57865 - 58695 (-)
Gene ID: HRGMv2_1781_10_55
Type: STP
Location: 58755 - 59084 (-)
Type: STP
Location: 58755 - 59084 (-)
Gene ID: HRGMv2_1781_10_56
Type: pfam
Location: 59297 - 60784 (+)
Type: pfam
Location: 59297 - 60784 (+)
Gene ID: HRGMv2_1781_10_57
Type: CAZyme
Location: 60845 - 63292 (-)
Type: CAZyme
Location: 60845 - 63292 (-)
Gene ID: HRGMv2_1781_10_58
Type: CAZyme
Location: 63308 - 64741 (-)
Type: CAZyme
Location: 63308 - 64741 (-)
Gene ID: HRGMv2_1781_10_59
Type: pfam
Location: 64741 - 66036 (-)
Type: pfam
Location: 64741 - 66036 (-)
Gene ID: HRGMv2_1781_10_60
Type: CAZyme
Location: 66117 - 68093 (-)
Type: CAZyme
Location: 66117 - 68093 (-)
Gene ID: HRGMv2_1781_10_61
Type: CAZyme
Location: 68090 - 70276 (-)
Type: CAZyme
Location: 68090 - 70276 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Klebsiella
Species
Klebsiella grimontii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.