Cluster: HRGMv2_1781_CGC42
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1781
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1781_8 | HRGMv2_1781_8_150 | 154123 | 154611 | + | 5.A.3.11.1 |
| STP | HRGMv2_1781_8 | HRGMv2_1781_8_151 | 154713 | 155972 | - | Aminotran_1_2 |
| CAZyme | HRGMv2_1781_8 | HRGMv2_1781_8_152 | 156146 | 158179 | - | GH13_19 |
| CAZyme | HRGMv2_1781_8 | HRGMv2_1781_8_153 | 158759 | 159322 | + | GH73 |
| TF | HRGMv2_1781_8 | HRGMv2_1781_8_154 | 159383 | 160561 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_1781_8 | HRGMv2_1781_8_155 | 160684 | 161865 | - | 3.A.1.2.4 |
| TC | HRGMv2_1781_8 | HRGMv2_1781_8_156 | 161843 | 163384 | - | 3.A.1.2.4 |
| TC | HRGMv2_1781_8 | HRGMv2_1781_8_157 | 163449 | 164441 | - | 3.A.1.2.4 |
| NULL(UNKNOWN) | HRGMv2_1781_8 | HRGMv2_1781_8_158 | 164816 | 166138 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_1781_8 | HRGMv2_1781_8_159 | 166214 | 167668 | + | FGGY_N | FGGY_C |
| TC | HRGMv2_1781_8 | HRGMv2_1781_8_160 | 167837 | 168217 | + | 9.B.44.1.1 |
| TC | HRGMv2_1781_8 | HRGMv2_1781_8_161 | 168214 | 169209 | - | 9.B.97.1.1 |
Gene ID: HRGMv2_1781_8_150
Type: TC
Location: 154123 - 154611 (+)
Type: TC
Location: 154123 - 154611 (+)
Gene ID: HRGMv2_1781_8_151
Type: STP
Location: 154713 - 155972 (-)
Type: STP
Location: 154713 - 155972 (-)
Gene ID: HRGMv2_1781_8_152
Type: CAZyme
Location: 156146 - 158179 (-)
Type: CAZyme
Location: 156146 - 158179 (-)
Gene ID: HRGMv2_1781_8_153
Type: CAZyme
Location: 158759 - 159322 (+)
Type: CAZyme
Location: 158759 - 159322 (+)
Gene ID: HRGMv2_1781_8_154
Type: TF
Location: 159383 - 160561 (-)
Type: TF
Location: 159383 - 160561 (-)
Gene ID: HRGMv2_1781_8_155
Type: TC
Location: 160684 - 161865 (-)
Type: TC
Location: 160684 - 161865 (-)
Gene ID: HRGMv2_1781_8_156
Type: TC
Location: 161843 - 163384 (-)
Type: TC
Location: 161843 - 163384 (-)
Gene ID: HRGMv2_1781_8_157
Type: TC
Location: 163449 - 164441 (-)
Type: TC
Location: 163449 - 164441 (-)
Gene ID: HRGMv2_1781_8_158
Type:
Location: 164816 - 166138 (+)
Type:
Location: 164816 - 166138 (+)
Gene ID: HRGMv2_1781_8_159
Type: pfam
Location: 166214 - 167668 (+)
Type: pfam
Location: 166214 - 167668 (+)
Gene ID: HRGMv2_1781_8_160
Type: TC
Location: 167837 - 168217 (+)
Type: TC
Location: 167837 - 168217 (+)
Gene ID: HRGMv2_1781_8_161
Type: TC
Location: 168214 - 169209 (-)
Type: TC
Location: 168214 - 169209 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Klebsiella
Species
Klebsiella grimontii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.