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Cluster: HRGMv2_1781_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1781_5 HRGMv2_1781_5_21 29185 30873 - 9.B.33.1.1
TF HRGMv2_1781_5 HRGMv2_1781_5_22 31084 31842 + MerR
NULL(UNKNOWN) HRGMv2_1781_5 HRGMv2_1781_5_23 32002 32115 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1781_5 HRGMv2_1781_5_24 32090 32827 - 3.A.1.12.15
TC HRGMv2_1781_5 HRGMv2_1781_5_25 32811 33758 - 3.A.1.12.15
TC HRGMv2_1781_5 HRGMv2_1781_5_26 33751 34902 - 3.A.1.12.15
TC HRGMv2_1781_5 HRGMv2_1781_5_27 34910 35827 - 3.A.1.12.15
CAZyme HRGMv2_1781_5 HRGMv2_1781_5_28 35995 38292 - GH3
Gene ID: HRGMv2_1781_5_21
Type: TC
Location: 29185 - 30873 (-)
Gene ID: HRGMv2_1781_5_22
Type: TF
Location: 31084 - 31842 (+)
Gene ID: HRGMv2_1781_5_23
Type:
Location: 32002 - 32115 (+)
Gene ID: HRGMv2_1781_5_24
Type: TC
Location: 32090 - 32827 (-)
Gene ID: HRGMv2_1781_5_25
Type: TC
Location: 32811 - 33758 (-)
Gene ID: HRGMv2_1781_5_26
Type: TC
Location: 33751 - 34902 (-)
Gene ID: HRGMv2_1781_5_27
Type: TC
Location: 34910 - 35827 (-)
Gene ID: HRGMv2_1781_5_28
Type: CAZyme
Location: 35995 - 38292 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1781_5_23 vegetarian > vegan 3.70295 0.04473
HRGMv2_1781_5_25 vegan > omnivore 1.73715 0.03482

🧭 Explore Read Mapping of CGC

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