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Cluster: HRGMv2_1781_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1781_4 HRGMv2_1781_4_79 90462 91493 + GH109
pfam HRGMv2_1781_4 HRGMv2_1781_4_80 91533 92540 - GFO_IDH_MocA | GFO_IDH_MocA_C | F420_oxidored | GFO_IDH_MocA_C3
TF HRGMv2_1781_4 HRGMv2_1781_4_81 92628 93659 + LacI
TC HRGMv2_1781_4 HRGMv2_1781_4_82 94110 95033 + 3.A.1.2.15
TC HRGMv2_1781_4 HRGMv2_1781_4_83 95058 96542 + 3.A.1.2.3
TC HRGMv2_1781_4 HRGMv2_1781_4_84 96553 97584 + 3.A.1.2.15
peptidase HRGMv2_1781_4 HRGMv2_1781_4_85 97629 98870 - M20.UNW
pfam HRGMv2_1781_4 HRGMv2_1781_4_86 98867 99349 - ATC_hydrolase
TC HRGMv2_1781_4 HRGMv2_1781_4_87 99367 100524 - 3.A.1.4.3
TC HRGMv2_1781_4 HRGMv2_1781_4_88 100552 101271 - 3.A.1.4.10
TC HRGMv2_1781_4 HRGMv2_1781_4_89 101264 102031 - 3.A.1.4.10
TC HRGMv2_1781_4 HRGMv2_1781_4_90 102028 103134 - 3.A.1.4.8
TC HRGMv2_1781_4 HRGMv2_1781_4_91 103145 104059 - 3.A.1.4.8
TF HRGMv2_1781_4 HRGMv2_1781_4_92 104267 105196 + HTH_1
TC HRGMv2_1781_4 HRGMv2_1781_4_93 105408 107288 + 4.A.1.2.11
CAZyme HRGMv2_1781_4 HRGMv2_1781_4_94 107285 108709 + GH1
Gene ID: HRGMv2_1781_4_79
Type: CAZyme
Location: 90462 - 91493 (+)
Gene ID: HRGMv2_1781_4_80
Type: pfam
Location: 91533 - 92540 (-)
Gene ID: HRGMv2_1781_4_81
Type: TF
Location: 92628 - 93659 (+)
Gene ID: HRGMv2_1781_4_82
Type: TC
Location: 94110 - 95033 (+)
Gene ID: HRGMv2_1781_4_83
Type: TC
Location: 95058 - 96542 (+)
Gene ID: HRGMv2_1781_4_84
Type: TC
Location: 96553 - 97584 (+)
Gene ID: HRGMv2_1781_4_85
Type: peptidase
Location: 97629 - 98870 (-)
Gene ID: HRGMv2_1781_4_86
Type: pfam
Location: 98867 - 99349 (-)
Gene ID: HRGMv2_1781_4_87
Type: TC
Location: 99367 - 100524 (-)
Gene ID: HRGMv2_1781_4_88
Type: TC
Location: 100552 - 101271 (-)
Gene ID: HRGMv2_1781_4_89
Type: TC
Location: 101264 - 102031 (-)
Gene ID: HRGMv2_1781_4_90
Type: TC
Location: 102028 - 103134 (-)
Gene ID: HRGMv2_1781_4_91
Type: TC
Location: 103145 - 104059 (-)
Gene ID: HRGMv2_1781_4_92
Type: TF
Location: 104267 - 105196 (+)
Gene ID: HRGMv2_1781_4_93
Type: TC
Location: 105408 - 107288 (+)
Gene ID: HRGMv2_1781_4_94
Type: CAZyme
Location: 107285 - 108709 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1781_4_91 vegan > omnivore 1.27189 0.02505

🧭 Explore Read Mapping of CGC

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