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Cluster: HRGMv2_1781_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1781_3 HRGMv2_1781_3_272 278746 280821 - CBM48 | GH13_11
CAZyme HRGMv2_1781_3 HRGMv2_1781_3_273 280824 283364 - GH13_26
CAZyme HRGMv2_1781_3 HRGMv2_1781_3_274 283361 285148 - GH13_10
pfam HRGMv2_1781_3 HRGMv2_1781_3_275 285396 286280 + adh_short | KR | adh_short_C2
NULL(UNKNOWN) HRGMv2_1781_3 HRGMv2_1781_3_276 286331 286561 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1781_3 HRGMv2_1781_3_277 286879 287040 + 9.B.12.2.1
pfam HRGMv2_1781_3 HRGMv2_1781_3_278 287120 287563 + Ivy
TC HRGMv2_1781_3 HRGMv2_1781_3_279 287668 288303 - 3.D.5.1.1
Gene ID: HRGMv2_1781_3_272
Type: CAZyme
Location: 278746 - 280821 (-)
Gene ID: HRGMv2_1781_3_273
Type: CAZyme
Location: 280824 - 283364 (-)
Gene ID: HRGMv2_1781_3_274
Type: CAZyme
Location: 283361 - 285148 (-)
Gene ID: HRGMv2_1781_3_275
Type: pfam
Location: 285396 - 286280 (+)
Gene ID: HRGMv2_1781_3_276
Type:
Location: 286331 - 286561 (-)
Gene ID: HRGMv2_1781_3_277
Type: TC
Location: 286879 - 287040 (+)
Gene ID: HRGMv2_1781_3_278
Type: pfam
Location: 287120 - 287563 (+)
Gene ID: HRGMv2_1781_3_279
Type: TC
Location: 287668 - 288303 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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