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Cluster: HRGMv2_1781_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1781_1 HRGMv2_1781_1_434 443847 445154 + GH4
TC HRGMv2_1781_1 HRGMv2_1781_1_435 445233 446525 + 2.A.1.5.1
TF HRGMv2_1781_1 HRGMv2_1781_1_436 446727 447071 - HTH_AraC
STP HRGMv2_1781_1 HRGMv2_1781_1_437 447172 447768 - TetR_C | TetR_N
TC HRGMv2_1781_1 HRGMv2_1781_1_438 447936 449372 + 2.A.1.3.21
pfam HRGMv2_1781_1 HRGMv2_1781_1_439 449537 450322 - adh_short | KR | adh_short_C2
TF HRGMv2_1781_1 HRGMv2_1781_1_440 450374 451270 - GntR
TC HRGMv2_1781_1 HRGMv2_1781_1_441 451462 452274 + 3.A.1.3.2
TC HRGMv2_1781_1 HRGMv2_1781_1_442 452303 453028 + 3.A.1.3.24
TC HRGMv2_1781_1 HRGMv2_1781_1_443 453025 453765 + 3.A.1.3.22
Gene ID: HRGMv2_1781_1_434
Type: CAZyme
Location: 443847 - 445154 (+)
Gene ID: HRGMv2_1781_1_435
Type: TC
Location: 445233 - 446525 (+)
Gene ID: HRGMv2_1781_1_436
Type: TF
Location: 446727 - 447071 (-)
Gene ID: HRGMv2_1781_1_437
Type: STP
Location: 447172 - 447768 (-)
Gene ID: HRGMv2_1781_1_438
Type: TC
Location: 447936 - 449372 (+)
Gene ID: HRGMv2_1781_1_439
Type: pfam
Location: 449537 - 450322 (-)
Gene ID: HRGMv2_1781_1_440
Type: TF
Location: 450374 - 451270 (-)
Gene ID: HRGMv2_1781_1_441
Type: TC
Location: 451462 - 452274 (+)
Gene ID: HRGMv2_1781_1_442
Type: TC
Location: 452303 - 453028 (+)
Gene ID: HRGMv2_1781_1_443
Type: TC
Location: 453025 - 453765 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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