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Cluster: HRGMv2_1773_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1773_32 HRGMv2_1773_32_1 78 401 - 2.A.78.2.3
TC HRGMv2_1773_32 HRGMv2_1773_32_2 401 1060 - 2.A.78.2.3
TF HRGMv2_1773_32 HRGMv2_1773_32_3 1165 1713 + HTH_3
TF HRGMv2_1773_32 HRGMv2_1773_32_4 1731 2726 + LacI
CAZyme HRGMv2_1773_32 HRGMv2_1773_32_5 2830 4953 + GH36
TC HRGMv2_1773_32 HRGMv2_1773_32_6 4998 6275 + 2.A.1.5.4
Gene ID: HRGMv2_1773_32_1
Type: TC
Location: 78 - 401 (-)
Gene ID: HRGMv2_1773_32_2
Type: TC
Location: 401 - 1060 (-)
Gene ID: HRGMv2_1773_32_3
Type: TF
Location: 1165 - 1713 (+)
Gene ID: HRGMv2_1773_32_4
Type: TF
Location: 1731 - 2726 (+)
Gene ID: HRGMv2_1773_32_5
Type: CAZyme
Location: 2830 - 4953 (+)
Gene ID: HRGMv2_1773_32_6
Type: TC
Location: 4998 - 6275 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1773_32_1 vegetarian > omnivore 1.51467 0.01969
HRGMv2_1773_32_3 vegetarian > omnivore 1.09560 0.01969
HRGMv2_1773_32_3 vegetarian > vegan 1.28343 0.03866
HRGMv2_1773_32_4 vegetarian > omnivore 1.03891 0.01969
HRGMv2_1773_32_4 vegetarian > vegan 2.12523 0.03673
HRGMv2_1773_32_6 vegetarian > omnivore 1.42747 0.01969
HRGMv2_1773_32_6 vegetarian > vegan 1.02770 0.03866

🧭 Explore Read Mapping of CGC

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