Cluster: HRGMv2_1773_CGC60
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1773
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1773_312 | HRGMv2_1773_312_73 | 71619 | 72362 | - | 9.B.158.1.2 |
| pfam | HRGMv2_1773_312 | HRGMv2_1773_312_74 | 72441 | 73001 | - | YecM |
| pfam | HRGMv2_1773_312 | HRGMv2_1773_312_75 | 73241 | 74974 | + | tRNA-synt_1d | Arg_tRNA_synt_N | DALR_1 |
| CAZyme | HRGMv2_1773_312 | HRGMv2_1773_312_76 | 75010 | 76152 | - | GH105 |
| TC | HRGMv2_1773_312 | HRGMv2_1773_312_77 | 76154 | 77737 | - | 2.A.2.5.2 |
| pfam | HRGMv2_1773_312 | HRGMv2_1773_312_78 | 78000 | 78392 | - | FlhE |
| TC | HRGMv2_1773_312 | HRGMv2_1773_312_79 | 78392 | 80470 | - | 3.A.6.2.1 |
| TC | HRGMv2_1773_312 | HRGMv2_1773_312_80 | 80463 | 81611 | - | 3.A.6.2.1 |
| pfam | HRGMv2_1773_312 | HRGMv2_1773_312_81 | 82114 | 82689 | + | Fimbrial |
| pfam | HRGMv2_1773_312 | HRGMv2_1773_312_82 | 82814 | 83506 | + | PapD_N | PapD_C |
| TC | HRGMv2_1773_312 | HRGMv2_1773_312_83 | 83515 | 86070 | + | 1.B.11.3.6 |
Gene ID: HRGMv2_1773_312_73
Type: TC
Location: 71619 - 72362 (-)
Type: TC
Location: 71619 - 72362 (-)
Gene ID: HRGMv2_1773_312_74
Type: pfam
Location: 72441 - 73001 (-)
Type: pfam
Location: 72441 - 73001 (-)
Gene ID: HRGMv2_1773_312_75
Type: pfam
Location: 73241 - 74974 (+)
Type: pfam
Location: 73241 - 74974 (+)
Gene ID: HRGMv2_1773_312_76
Type: CAZyme
Location: 75010 - 76152 (-)
Type: CAZyme
Location: 75010 - 76152 (-)
Gene ID: HRGMv2_1773_312_77
Type: TC
Location: 76154 - 77737 (-)
Type: TC
Location: 76154 - 77737 (-)
Gene ID: HRGMv2_1773_312_78
Type: pfam
Location: 78000 - 78392 (-)
Type: pfam
Location: 78000 - 78392 (-)
Gene ID: HRGMv2_1773_312_79
Type: TC
Location: 78392 - 80470 (-)
Type: TC
Location: 78392 - 80470 (-)
Gene ID: HRGMv2_1773_312_80
Type: TC
Location: 80463 - 81611 (-)
Type: TC
Location: 80463 - 81611 (-)
Gene ID: HRGMv2_1773_312_81
Type: pfam
Location: 82114 - 82689 (+)
Type: pfam
Location: 82114 - 82689 (+)
Gene ID: HRGMv2_1773_312_82
Type: pfam
Location: 82814 - 83506 (+)
Type: pfam
Location: 82814 - 83506 (+)
Gene ID: HRGMv2_1773_312_83
Type: TC
Location: 83515 - 86070 (+)
Type: TC
Location: 83515 - 86070 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Enterobacter
Species
Enterobacter kobei
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1773_312_76 | vegetarian > omnivore | 1.35705 | 0.01969 |
| HRGMv2_1773_312_76 | vegetarian > vegan | 1.00251 | 0.03866 |
| HRGMv2_1773_312_77 | vegetarian > omnivore | 1.76348 | 0.01969 |
| HRGMv2_1773_312_77 | vegetarian > vegan | 1.31707 | 0.03746 |