Cluster: HRGMv2_1773_CGC51
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1773
- CGC Family ID: CGCFAM_00236
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1773_281 | HRGMv2_1773_281_11 | 8689 | 10125 | + | 2.A.1.3.38 |
| TC | HRGMv2_1773_281 | HRGMv2_1773_281_12 | 10192 | 11436 | + | 1.A.23.4.5 |
| TF | HRGMv2_1773_281 | HRGMv2_1773_281_13 | 11437 | 12408 | - | LacI |
| CAZyme | HRGMv2_1773_281 | HRGMv2_1773_281_14 | 12484 | 13626 | - | GH109 |
| pfam | HRGMv2_1773_281 | HRGMv2_1773_281_15 | 13619 | 14644 | - | AP_endonuc_2 |
| TC | HRGMv2_1773_281 | HRGMv2_1773_281_16 | 14660 | 15895 | - | 2.A.1.10.4 |
Gene ID: HRGMv2_1773_281_11
Type: TC
Location: 8689 - 10125 (+)
Type: TC
Location: 8689 - 10125 (+)
Gene ID: HRGMv2_1773_281_12
Type: TC
Location: 10192 - 11436 (+)
Type: TC
Location: 10192 - 11436 (+)
Gene ID: HRGMv2_1773_281_13
Type: TF
Location: 11437 - 12408 (-)
Type: TF
Location: 11437 - 12408 (-)
Gene ID: HRGMv2_1773_281_14
Type: CAZyme
Location: 12484 - 13626 (-)
Type: CAZyme
Location: 12484 - 13626 (-)
Gene ID: HRGMv2_1773_281_15
Type: pfam
Location: 13619 - 14644 (-)
Type: pfam
Location: 13619 - 14644 (-)
Gene ID: HRGMv2_1773_281_16
Type: TC
Location: 14660 - 15895 (-)
Type: TC
Location: 14660 - 15895 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Enterobacter
Species
Enterobacter kobei
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1773_281_11 | vegetarian > omnivore | 2.51057 | 0.01969 |
| HRGMv2_1773_281_12 | vegetarian > omnivore | 1.06520 | 0.01969 |
| HRGMv2_1773_281_13 | vegan > omnivore | 2.01327 | 0.02605 |
| HRGMv2_1773_281_13 | vegetarian > omnivore | 2.63716 | 0.01969 |
| HRGMv2_1773_281_14 | vegetarian > omnivore | 1.25969 | 0.01969 |
| HRGMv2_1773_281_14 | vegetarian > vegan | 1.15254 | 0.03866 |