dbCAN HGM

Cluster: HRGMv2_1773_CGC49

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_1773_277	HRGMv2_1773_277_6	7328	9244	+	4.A.2.1.3
CAZyme	HRGMv2_1773_277	HRGMv2_1773_277_7	9268	11898	+	GH38
TC	HRGMv2_1773_277	HRGMv2_1773_277_8	12570	14138	+	3.D.4.3.2
TC	HRGMv2_1773_277	HRGMv2_1773_277_9	14154	15293	+	3.D.4.3.2
TC	HRGMv2_1773_277	HRGMv2_1773_277_10	15308	15421	+	9.B.85.1.1
TC	HRGMv2_1773_277	HRGMv2_1773_277_11	15421	15711	+	8.A.79.1.1
pfam	HRGMv2_1773_277	HRGMv2_1773_277_12	15860	16264	+	4HBT \| 4HBT_2
TC	HRGMv2_1773_277	HRGMv2_1773_277_13	16261	16953	+	1.A.30.2.2
TC	HRGMv2_1773_277	HRGMv2_1773_277_14	16957	17385	+	1.A.30.2.2
TC	HRGMv2_1773_277	HRGMv2_1773_277_15	17414	18682	+	2.C.1.2.1
TC	HRGMv2_1773_277	HRGMv2_1773_277_16	18813	20105	+	2.C.1.2.1
TC	HRGMv2_1773_277	HRGMv2_1773_277_17	20141	20662	+	2.C.1.2.1
TC	HRGMv2_1773_277	HRGMv2_1773_277_18	20672	21469	+	2.C.1.2.1

Gene ID: HRGMv2_1773_277_6
Type: TC
Location: 7328 - 9244 (+)

Gene ID: HRGMv2_1773_277_7
Type: CAZyme
Location: 9268 - 11898 (+)

Gene ID: HRGMv2_1773_277_8
Type: TC
Location: 12570 - 14138 (+)

Gene ID: HRGMv2_1773_277_9
Type: TC
Location: 14154 - 15293 (+)

Gene ID: HRGMv2_1773_277_10
Type: TC
Location: 15308 - 15421 (+)

Gene ID: HRGMv2_1773_277_11
Type: TC
Location: 15421 - 15711 (+)

Gene ID: HRGMv2_1773_277_12
Type: pfam
Location: 15860 - 16264 (+)

Gene ID: HRGMv2_1773_277_13
Type: TC
Location: 16261 - 16953 (+)

Gene ID: HRGMv2_1773_277_14
Type: TC
Location: 16957 - 17385 (+)

Gene ID: HRGMv2_1773_277_15
Type: TC
Location: 17414 - 18682 (+)

Gene ID: HRGMv2_1773_277_16
Type: TC
Location: 18813 - 20105 (+)

Gene ID: HRGMv2_1773_277_17
Type: TC
Location: 20141 - 20662 (+)

Gene ID: HRGMv2_1773_277_18
Type: TC
Location: 20672 - 21469 (+)

Taxonomic Lineage

Domain

→

Phylum

→

Class

→

Order

→

Family

→

Genus

→

Species

Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_1773_277_6	vegetarian > omnivore	2.89186	0.00698
HRGMv2_1773_277_6	vegetarian > vegan	1.60592	0.03866
HRGMv2_1773_277_7	vegetarian > omnivore	1.88952	0.01969
HRGMv2_1773_277_7	vegetarian > vegan	1.47718	0.03866

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_1773_277_8	omnivore > flexitarian	1.17665	0.01054
HRGMv2_1773_277_8	vegan > flexitarian	1.27787	0.04533
HRGMv2_1773_277_16	omnivore > flexitarian	1.05903	0.01054