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Cluster: HRGMv2_1773_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1773_146 HRGMv2_1773_146_1 34 2481 - GT35
CAZyme HRGMv2_1773_146 HRGMv2_1773_146_2 2500 3933 - GT5
pfam HRGMv2_1773_146 HRGMv2_1773_146_3 3933 5228 - NTP_transferase | NTP_transf_3 | Hexapep_GlmU
CAZyme HRGMv2_1773_146 HRGMv2_1773_146_4 5246 7219 - CBM48 | GH13_11
CAZyme HRGMv2_1773_146 HRGMv2_1773_146_5 7216 9477 - CBM48 | GH13_9
pfam HRGMv2_1773_146 HRGMv2_1773_146_6 9633 10736 - Semialdhyde_dh | Semialdhyde_dhC
TC HRGMv2_1773_146 HRGMv2_1773_146_7 10914 11507 + 2.A.95.1.5
pfam HRGMv2_1773_146 HRGMv2_1773_146_8 11608 11850 - TusA
TC HRGMv2_1773_146 HRGMv2_1773_146_9 12018 12683 + 2.A.88.8.6
pfam HRGMv2_1773_146 HRGMv2_1773_146_10 12756 13313 + DcrB
TC HRGMv2_1773_146 HRGMv2_1773_146_11 13317 14534 - 2.A.1.46.7
TC HRGMv2_1773_146 HRGMv2_1773_146_12 14680 15729 + 2.A.86.1.2
pfam HRGMv2_1773_146 HRGMv2_1773_146_13 15830 16426 + ACPS
TC HRGMv2_1773_146 HRGMv2_1773_146_14 16383 16787 - 2.A.7.22.1
TC HRGMv2_1773_146 HRGMv2_1773_146_15 16784 17119 - 2.A.7.22.2
CAZyme HRGMv2_1773_146 HRGMv2_1773_146_16 17119 18774 - GT83
pfam HRGMv2_1773_146 HRGMv2_1773_146_17 18771 19673 - Polysacc_deac_1
pfam HRGMv2_1773_146 HRGMv2_1773_146_18 19670 21652 - Formyl_trans_N | Epimerase | Formyl_trans_C | GDP_Man_Dehyd
CAZyme HRGMv2_1773_146 HRGMv2_1773_146_19 21649 22686 - GT2
Gene ID: HRGMv2_1773_146_1
Type: CAZyme
Location: 34 - 2481 (-)
Gene ID: HRGMv2_1773_146_2
Type: CAZyme
Location: 2500 - 3933 (-)
Gene ID: HRGMv2_1773_146_3
Type: pfam
Location: 3933 - 5228 (-)
Gene ID: HRGMv2_1773_146_4
Type: CAZyme
Location: 5246 - 7219 (-)
Gene ID: HRGMv2_1773_146_5
Type: CAZyme
Location: 7216 - 9477 (-)
Gene ID: HRGMv2_1773_146_6
Type: pfam
Location: 9633 - 10736 (-)
Gene ID: HRGMv2_1773_146_7
Type: TC
Location: 10914 - 11507 (+)
Gene ID: HRGMv2_1773_146_8
Type: pfam
Location: 11608 - 11850 (-)
Gene ID: HRGMv2_1773_146_9
Type: TC
Location: 12018 - 12683 (+)
Gene ID: HRGMv2_1773_146_10
Type: pfam
Location: 12756 - 13313 (+)
Gene ID: HRGMv2_1773_146_11
Type: TC
Location: 13317 - 14534 (-)
Gene ID: HRGMv2_1773_146_12
Type: TC
Location: 14680 - 15729 (+)
Gene ID: HRGMv2_1773_146_13
Type: pfam
Location: 15830 - 16426 (+)
Gene ID: HRGMv2_1773_146_14
Type: TC
Location: 16383 - 16787 (-)
Gene ID: HRGMv2_1773_146_15
Type: TC
Location: 16784 - 17119 (-)
Gene ID: HRGMv2_1773_146_16
Type: CAZyme
Location: 17119 - 18774 (-)
Gene ID: HRGMv2_1773_146_17
Type: pfam
Location: 18771 - 19673 (-)
Gene ID: HRGMv2_1773_146_18
Type: pfam
Location: 19670 - 21652 (-)
Gene ID: HRGMv2_1773_146_19
Type: CAZyme
Location: 21649 - 22686 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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