Cluster: HRGMv2_1773_CGC26
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1773
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1773_129 | HRGMv2_1773_129_1 | 93 | 1922 | - | CBM73 | GH19 |
| CAZyme | HRGMv2_1773_129 | HRGMv2_1773_129_2 | 2056 | 2496 | - | GH23 |
| CAZyme | HRGMv2_1773_129 | HRGMv2_1773_129_3 | 2599 | 5313 | - | GH18 |
| TC | HRGMv2_1773_129 | HRGMv2_1773_129_4 | 5567 | 6364 | - | 3.A.15.2.1 |
| pfam | HRGMv2_1773_129 | HRGMv2_1773_129_5 | 6361 | 6846 | - | T2SSM |
| pfam | HRGMv2_1773_129 | HRGMv2_1773_129_6 | 6843 | 7976 | - | T2SSL | GspL_C |
| TC | HRGMv2_1773_129 | HRGMv2_1773_129_7 | 7992 | 9002 | - | 3.A.15.1.1 |
| TC | HRGMv2_1773_129 | HRGMv2_1773_129_8 | 8999 | 9670 | - | 3.A.15.1.1 |
| TC | HRGMv2_1773_129 | HRGMv2_1773_129_9 | 9667 | 10047 | - | 3.A.15.1.1 |
| TC | HRGMv2_1773_129 | HRGMv2_1773_129_10 | 10040 | 10525 | - | 3.A.15.1.1 |
| TC | HRGMv2_1773_129 | HRGMv2_1773_129_11 | 10525 | 10974 | - | 3.A.15.1.1 |
| TC | HRGMv2_1773_129 | HRGMv2_1773_129_12 | 10978 | 12186 | - | 3.A.15.1.1 |
| TC | HRGMv2_1773_129 | HRGMv2_1773_129_13 | 12186 | 13664 | - | 3.A.15.1.1 |
| TC | HRGMv2_1773_129 | HRGMv2_1773_129_14 | 13679 | 15610 | - | 1.B.22.1.1 |
Gene ID: HRGMv2_1773_129_1
Type: CAZyme
Location: 93 - 1922 (-)
Type: CAZyme
Location: 93 - 1922 (-)
Gene ID: HRGMv2_1773_129_2
Type: CAZyme
Location: 2056 - 2496 (-)
Type: CAZyme
Location: 2056 - 2496 (-)
Gene ID: HRGMv2_1773_129_3
Type: CAZyme
Location: 2599 - 5313 (-)
Type: CAZyme
Location: 2599 - 5313 (-)
Gene ID: HRGMv2_1773_129_4
Type: TC
Location: 5567 - 6364 (-)
Type: TC
Location: 5567 - 6364 (-)
Gene ID: HRGMv2_1773_129_5
Type: pfam
Location: 6361 - 6846 (-)
Type: pfam
Location: 6361 - 6846 (-)
Gene ID: HRGMv2_1773_129_6
Type: pfam
Location: 6843 - 7976 (-)
Type: pfam
Location: 6843 - 7976 (-)
Gene ID: HRGMv2_1773_129_7
Type: TC
Location: 7992 - 9002 (-)
Type: TC
Location: 7992 - 9002 (-)
Gene ID: HRGMv2_1773_129_8
Type: TC
Location: 8999 - 9670 (-)
Type: TC
Location: 8999 - 9670 (-)
Gene ID: HRGMv2_1773_129_9
Type: TC
Location: 9667 - 10047 (-)
Type: TC
Location: 9667 - 10047 (-)
Gene ID: HRGMv2_1773_129_10
Type: TC
Location: 10040 - 10525 (-)
Type: TC
Location: 10040 - 10525 (-)
Gene ID: HRGMv2_1773_129_11
Type: TC
Location: 10525 - 10974 (-)
Type: TC
Location: 10525 - 10974 (-)
Gene ID: HRGMv2_1773_129_12
Type: TC
Location: 10978 - 12186 (-)
Type: TC
Location: 10978 - 12186 (-)
Gene ID: HRGMv2_1773_129_13
Type: TC
Location: 12186 - 13664 (-)
Type: TC
Location: 12186 - 13664 (-)
Gene ID: HRGMv2_1773_129_14
Type: TC
Location: 13679 - 15610 (-)
Type: TC
Location: 13679 - 15610 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Enterobacter
Species
Enterobacter kobei
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1773_129_1 | vegetarian > omnivore | 1.14338 | 0.01969 |
| HRGMv2_1773_129_2 | vegetarian > omnivore | 1.91460 | 0.01969 |
| HRGMv2_1773_129_2 | vegetarian > vegan | 1.51161 | 0.03866 |
| HRGMv2_1773_129_3 | vegetarian > omnivore | 1.48753 | 0.01969 |
| HRGMv2_1773_129_7 | vegetarian > omnivore | 2.83594 | 0.01969 |
| HRGMv2_1773_129_7 | vegetarian > vegan | 1.10499 | 0.03866 |
| HRGMv2_1773_129_9 | vegetarian > omnivore | 2.08561 | 0.01969 |
| HRGMv2_1773_129_10 | vegetarian > omnivore | 2.91239 | 0.01969 |
| HRGMv2_1773_129_11 | vegetarian > omnivore | 3.40449 | 0.01969 |
| HRGMv2_1773_129_12 | vegetarian > omnivore | 1.45167 | 0.01969 |