Cluster: HRGMv2_1773_CGC23

🧬 Cluster Details

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_1773_124	HRGMv2_1773_124_3	1271	2956	-	9.B.33.1.1
TF	HRGMv2_1773_124	HRGMv2_1773_124_4	3174	3914	+	MerR
NULL(UNKNOWN)	HRGMv2_1773_124	HRGMv2_1773_124_5	3984	4097	+	NULL(UNKNOWN) [View Structural Homologs]
TC	HRGMv2_1773_124	HRGMv2_1773_124_6	4072	4809	-	3.A.1.12.15
TC	HRGMv2_1773_124	HRGMv2_1773_124_7	4793	5743	-	3.A.1.12.15
TC	HRGMv2_1773_124	HRGMv2_1773_124_8	5736	6893	-	3.A.1.12.15
TC	HRGMv2_1773_124	HRGMv2_1773_124_9	6906	7823	-	3.A.1.12.15
CAZyme	HRGMv2_1773_124	HRGMv2_1773_124_10	7971	10268	-	GH3

Gene ID: HRGMv2_1773_124_3
Type: TC
Location: 1271 - 2956 (-)

Gene ID: HRGMv2_1773_124_4
Type: TF
Location: 3174 - 3914 (+)

Gene ID: HRGMv2_1773_124_5
Type:
Location: 3984 - 4097 (+)

Gene ID: HRGMv2_1773_124_6
Type: TC
Location: 4072 - 4809 (-)

Gene ID: HRGMv2_1773_124_7
Type: TC
Location: 4793 - 5743 (-)

Gene ID: HRGMv2_1773_124_8
Type: TC
Location: 5736 - 6893 (-)

Gene ID: HRGMv2_1773_124_9
Type: TC
Location: 6906 - 7823 (-)

Gene ID: HRGMv2_1773_124_10
Type: CAZyme
Location: 7971 - 10268 (-)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_1773_124_4	vegetarian > omnivore	1.89792	0.01969
HRGMv2_1773_124_4	vegetarian > vegan	1.77533	0.03746
HRGMv2_1773_124_5	vegetarian > omnivore	2.56793	0.01969
HRGMv2_1773_124_5	vegetarian > vegan	1.43197	0.03866
HRGMv2_1773_124_7	vegetarian > omnivore	2.31043	0.01969
HRGMv2_1773_124_7	vegetarian > vegan	1.34276	0.03866