Cluster: HRGMv2_1773_CGC19
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1773
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1773_93 | HRGMv2_1773_93_1 | 147 | 1808 | + | 2.A.81.1.5 |
| TF | HRGMv2_1773_93 | HRGMv2_1773_93_2 | 1776 | 2522 | - | GntR |
| TC | HRGMv2_1773_93 | HRGMv2_1773_93_3 | 2745 | 4367 | + | 4.A.1.1.10 |
| CAZyme | HRGMv2_1773_93 | HRGMv2_1773_93_4 | 4364 | 5686 | + | GH4 |
| TC | HRGMv2_1773_93 | HRGMv2_1773_93_5 | 5779 | 6126 | + | 9.B.51.1.1 |
| pfam | HRGMv2_1773_93 | HRGMv2_1773_93_6 | 6116 | 6463 | + | DUF202 |
| STP | HRGMv2_1773_93 | HRGMv2_1773_93_7 | 6498 | 7784 | - | PALP |
| TC | HRGMv2_1773_93 | HRGMv2_1773_93_8 | 7802 | 9139 | - | 2.A.8.1.5 |
| TF | HRGMv2_1773_93 | HRGMv2_1773_93_9 | 9344 | 10270 | + | HTH_1 |
| CAZyme | HRGMv2_1773_93 | HRGMv2_1773_93_10 | 10355 | 11443 | + | GH5_25 |
| TC | HRGMv2_1773_93 | HRGMv2_1773_93_11 | 11346 | 12503 | - | 2.A.1.2.9 |
| TC | HRGMv2_1773_93 | HRGMv2_1773_93_12 | 12706 | 13539 | - | 2.A.7.31.3 |
Gene ID: HRGMv2_1773_93_1
Type: TC
Location: 147 - 1808 (+)
Type: TC
Location: 147 - 1808 (+)
Gene ID: HRGMv2_1773_93_2
Type: TF
Location: 1776 - 2522 (-)
Type: TF
Location: 1776 - 2522 (-)
Gene ID: HRGMv2_1773_93_3
Type: TC
Location: 2745 - 4367 (+)
Type: TC
Location: 2745 - 4367 (+)
Gene ID: HRGMv2_1773_93_4
Type: CAZyme
Location: 4364 - 5686 (+)
Type: CAZyme
Location: 4364 - 5686 (+)
Gene ID: HRGMv2_1773_93_5
Type: TC
Location: 5779 - 6126 (+)
Type: TC
Location: 5779 - 6126 (+)
Gene ID: HRGMv2_1773_93_6
Type: pfam
Location: 6116 - 6463 (+)
Type: pfam
Location: 6116 - 6463 (+)
Gene ID: HRGMv2_1773_93_7
Type: STP
Location: 6498 - 7784 (-)
Type: STP
Location: 6498 - 7784 (-)
Gene ID: HRGMv2_1773_93_8
Type: TC
Location: 7802 - 9139 (-)
Type: TC
Location: 7802 - 9139 (-)
Gene ID: HRGMv2_1773_93_9
Type: TF
Location: 9344 - 10270 (+)
Type: TF
Location: 9344 - 10270 (+)
Gene ID: HRGMv2_1773_93_10
Type: CAZyme
Location: 10355 - 11443 (+)
Type: CAZyme
Location: 10355 - 11443 (+)
Gene ID: HRGMv2_1773_93_11
Type: TC
Location: 11346 - 12503 (-)
Type: TC
Location: 11346 - 12503 (-)
Gene ID: HRGMv2_1773_93_12
Type: TC
Location: 12706 - 13539 (-)
Type: TC
Location: 12706 - 13539 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Enterobacter
Species
Enterobacter kobei
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1773_93_2 | vegetarian > vegan | 1.05813 | 0.03866 |
| HRGMv2_1773_93_5 | vegetarian > omnivore | 1.40482 | 0.01969 |
| HRGMv2_1773_93_6 | vegetarian > omnivore | 1.49801 | 0.01969 |
| HRGMv2_1773_93_7 | vegetarian > omnivore | 1.79739 | 0.01231 |
| HRGMv2_1773_93_7 | vegetarian > vegan | 1.10114 | 0.03746 |
| HRGMv2_1773_93_12 | vegetarian > omnivore | 1.70172 | 0.01969 |
| HRGMv2_1773_93_12 | vegetarian > vegan | 1.32246 | 0.03866 |