Cluster: HRGMv2_1773_CGC16
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate: beta-glucan
- Genome ID: HRGMv2_1773
- CGC Family ID: CGCFAM_00042
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1773_77 | HRGMv2_1773_77_2 | 1282 | 1596 | + | 4.A.3.2.6 |
| TC | HRGMv2_1773_77 | HRGMv2_1773_77_3 | 1608 | 2933 | + | 4.A.3.2.6 |
| CAZyme | HRGMv2_1773_77 | HRGMv2_1773_77_4 | 2951 | 4327 | + | GH1 |
| TC | HRGMv2_1773_77 | HRGMv2_1773_77_5 | 4330 | 4635 | + | 4.A.3.2.1 |
Gene ID: HRGMv2_1773_77_2
Type: TC
Location: 1282 - 1596 (+)
Type: TC
Location: 1282 - 1596 (+)
Gene ID: HRGMv2_1773_77_3
Type: TC
Location: 1608 - 2933 (+)
Type: TC
Location: 1608 - 2933 (+)
Gene ID: HRGMv2_1773_77_4
Type: CAZyme
Location: 2951 - 4327 (+)
Type: CAZyme
Location: 2951 - 4327 (+)
Gene ID: HRGMv2_1773_77_5
Type: TC
Location: 4330 - 4635 (+)
Type: TC
Location: 4330 - 4635 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Enterobacter
Species
Enterobacter kobei
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1773_77_2 | vegetarian > omnivore | 1.81659 | 0.01969 |
| HRGMv2_1773_77_2 | vegetarian > vegan | 1.16564 | 0.03866 |
| HRGMv2_1773_77_3 | vegetarian > omnivore | 1.25912 | 0.01969 |
| HRGMv2_1773_77_4 | vegetarian > omnivore | 1.21853 | 0.01969 |
| HRGMv2_1773_77_4 | vegetarian > vegan | 1.28747 | 0.03746 |
| HRGMv2_1773_77_5 | vegetarian > omnivore | 1.95044 | 0.01969 |