Cluster: HRGMv2_1764_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1764
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1764_139 | HRGMv2_1764_139_13 | 10092 | 11936 | - | 3.A.1.106.2 |
| TF | HRGMv2_1764_139 | HRGMv2_1764_139_14 | 12013 | 12903 | - | HTH_AraC | HTH_AraC |
| pfam | HRGMv2_1764_139 | HRGMv2_1764_139_15 | 13007 | 13351 | + | CMD |
| CAZyme | HRGMv2_1764_139 | HRGMv2_1764_139_16 | 13423 | 14193 | - | GT9 |
Gene ID: HRGMv2_1764_139_13
Type: TC
Location: 10092 - 11936 (-)
Type: TC
Location: 10092 - 11936 (-)
Gene ID: HRGMv2_1764_139_14
Type: TF
Location: 12013 - 12903 (-)
Type: TF
Location: 12013 - 12903 (-)
Gene ID: HRGMv2_1764_139_15
Type: pfam
Location: 13007 - 13351 (+)
Type: pfam
Location: 13007 - 13351 (+)
Gene ID: HRGMv2_1764_139_16
Type: CAZyme
Location: 13423 - 14193 (-)
Type: CAZyme
Location: 13423 - 14193 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_K
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1764_139_13 | vegetarian > vegan | 1.67238 | 0.04370 |
| HRGMv2_1764_139_14 | vegetarian > vegan | 1.23438 | 0.03044 |
| HRGMv2_1764_139_15 | vegan > omnivore | 1.19356 | 0.03728 |
| HRGMv2_1764_139_15 | vegetarian > omnivore | 1.28405 | 0.00711 |
| HRGMv2_1764_139_16 | vegetarian > omnivore | 1.52546 | 0.00711 |
| HRGMv2_1764_139_16 | vegetarian > vegan | 1.39567 | 0.04370 |