Cluster: HRGMv2_1764_CGC8
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1764
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1764_129 | HRGMv2_1764_129_3 | 2018 | 2833 | + | GT2 |
| TC | HRGMv2_1764_129 | HRGMv2_1764_129_4 | 2830 | 4206 | + | 2.A.38.1.1 |
| TC | HRGMv2_1764_129 | HRGMv2_1764_129_5 | 4285 | 4671 | + | 1.A.22.1.1 |
Gene ID: HRGMv2_1764_129_3
Type: CAZyme
Location: 2018 - 2833 (+)
Type: CAZyme
Location: 2018 - 2833 (+)
Gene ID: HRGMv2_1764_129_4
Type: TC
Location: 2830 - 4206 (+)
Type: TC
Location: 2830 - 4206 (+)
Gene ID: HRGMv2_1764_129_5
Type: TC
Location: 4285 - 4671 (+)
Type: TC
Location: 4285 - 4671 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_K
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1764_129_3 | vegan > omnivore | 1.75289 | 0.03728 |
| HRGMv2_1764_129_3 | vegetarian > omnivore | 1.10868 | 0.00711 |
| HRGMv2_1764_129_4 | vegetarian > omnivore | 1.30953 | 0.00711 |
| HRGMv2_1764_129_5 | vegan > omnivore | 1.81059 | 0.03728 |
| HRGMv2_1764_129_5 | vegetarian > omnivore | 3.60683 | 0.00711 |