Cluster: HRGMv2_1764_CGC7
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1764
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1764_127 | HRGMv2_1764_127_26 | 23257 | 24711 | - | 2.A.47.3.1 |
| peptidase | HRGMv2_1764_127 | HRGMv2_1764_127_27 | 24883 | 25818 | - | S33.UNW |
| pfam | HRGMv2_1764_127 | HRGMv2_1764_127_28 | 25871 | 26986 | - | Semialdhyde_dh | Semialdhyde_dhC |
| CAZyme | HRGMv2_1764_127 | HRGMv2_1764_127_29 | 27125 | 29143 | - | GT41 |
| pfam | HRGMv2_1764_127 | HRGMv2_1764_127_30 | 29183 | 30520 | - | UPF0004 | Radical_SAM | TRAM_2 |
| TC | HRGMv2_1764_127 | HRGMv2_1764_127_31 | 30686 | 31402 | + | 9.B.20.2.2 |
Gene ID: HRGMv2_1764_127_26
Type: TC
Location: 23257 - 24711 (-)
Type: TC
Location: 23257 - 24711 (-)
Gene ID: HRGMv2_1764_127_27
Type: peptidase
Location: 24883 - 25818 (-)
Type: peptidase
Location: 24883 - 25818 (-)
Gene ID: HRGMv2_1764_127_28
Type: pfam
Location: 25871 - 26986 (-)
Type: pfam
Location: 25871 - 26986 (-)
Gene ID: HRGMv2_1764_127_29
Type: CAZyme
Location: 27125 - 29143 (-)
Type: CAZyme
Location: 27125 - 29143 (-)
Gene ID: HRGMv2_1764_127_30
Type: pfam
Location: 29183 - 30520 (-)
Type: pfam
Location: 29183 - 30520 (-)
Gene ID: HRGMv2_1764_127_31
Type: TC
Location: 30686 - 31402 (+)
Type: TC
Location: 30686 - 31402 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_K
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1764_127_31 | vegetarian > omnivore | 1.04750 | 0.00711 |