Cluster: HRGMv2_1764_CGC6
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1764
- CGC Family ID: CGCFAM_05008
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1764_122 | HRGMv2_1764_122_1 | 2 | 157 | + | 3.A.1.5.27 |
| pfam | HRGMv2_1764_122 | HRGMv2_1764_122_2 | 224 | 856 | + | PNPOx_N | PNP_phzG_C | Pyridox_oxase_2 |
| CAZyme | HRGMv2_1764_122 | HRGMv2_1764_122_3 | 932 | 2038 | - | GH177 |
Gene ID: HRGMv2_1764_122_1
Type: TC
Location: 2 - 157 (+)
Type: TC
Location: 2 - 157 (+)
Gene ID: HRGMv2_1764_122_2
Type: pfam
Location: 224 - 856 (+)
Type: pfam
Location: 224 - 856 (+)
Gene ID: HRGMv2_1764_122_3
Type: CAZyme
Location: 932 - 2038 (-)
Type: CAZyme
Location: 932 - 2038 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_K
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1764_122_2 | vegetarian > omnivore | 1.13108 | 0.00711 |