Cluster: HRGMv2_1764_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1764
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1764_55 | HRGMv2_1764_55_4 | 1331 | 3235 | + | 2.A.37.1.2 |
| pfam | HRGMv2_1764_55 | HRGMv2_1764_55_5 | 3279 | 5429 | - | UPF0020 | THUMP | Cons_hypoth95 | Methyltrans_SAM | RlmL_1st |
| TC | HRGMv2_1764_55 | HRGMv2_1764_55_6 | 5549 | 6541 | - | 3.A.1.15.5 |
| TC | HRGMv2_1764_55 | HRGMv2_1764_55_7 | 6710 | 7471 | - | 3.A.16.1.3 |
| CAZyme | HRGMv2_1764_55 | HRGMv2_1764_55_8 | 7471 | 8133 | - | GH102 |
Gene ID: HRGMv2_1764_55_4
Type: TC
Location: 1331 - 3235 (+)
Type: TC
Location: 1331 - 3235 (+)
Gene ID: HRGMv2_1764_55_5
Type: pfam
Location: 3279 - 5429 (-)
Type: pfam
Location: 3279 - 5429 (-)
Gene ID: HRGMv2_1764_55_6
Type: TC
Location: 5549 - 6541 (-)
Type: TC
Location: 5549 - 6541 (-)
Gene ID: HRGMv2_1764_55_7
Type: TC
Location: 6710 - 7471 (-)
Type: TC
Location: 6710 - 7471 (-)
Gene ID: HRGMv2_1764_55_8
Type: CAZyme
Location: 7471 - 8133 (-)
Type: CAZyme
Location: 7471 - 8133 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_K
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1764_55_5 | vegan > omnivore | 1.22375 | 0.03728 |
| HRGMv2_1764_55_5 | vegetarian > omnivore | 1.31882 | 0.00711 |
| HRGMv2_1764_55_6 | vegan > omnivore | 1.37641 | 0.03728 |
| HRGMv2_1764_55_7 | vegan > omnivore | 1.38367 | 0.03728 |
| HRGMv2_1764_55_7 | vegetarian > omnivore | 1.26618 | 0.00711 |