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Cluster: HRGMv2_1764_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1764_40 HRGMv2_1764_40_13 11801 12745 + 2.A.16.1.2
TF HRGMv2_1764_40 HRGMv2_1764_40_14 12824 13537 - GntR
CAZyme HRGMv2_1764_40 HRGMv2_1764_40_15 13730 15235 + GH77
CAZyme HRGMv2_1764_40 HRGMv2_1764_40_16 15235 17502 + GT35
pfam HRGMv2_1764_40 HRGMv2_1764_40_17 17514 18305 + Exo_endo_phos
TC HRGMv2_1764_40 HRGMv2_1764_40_18 18316 19980 + 4.A.1.1.11
Gene ID: HRGMv2_1764_40_13
Type: TC
Location: 11801 - 12745 (+)
Gene ID: HRGMv2_1764_40_14
Type: TF
Location: 12824 - 13537 (-)
Gene ID: HRGMv2_1764_40_15
Type: CAZyme
Location: 13730 - 15235 (+)
Gene ID: HRGMv2_1764_40_16
Type: CAZyme
Location: 15235 - 17502 (+)
Gene ID: HRGMv2_1764_40_17
Type: pfam
Location: 17514 - 18305 (+)
Gene ID: HRGMv2_1764_40_18
Type: TC
Location: 18316 - 19980 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1764_40_18 vegan > omnivore 1.04705 0.03728

🧭 Explore Read Mapping of CGC

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