Cluster: HRGMv2_1764_CGC17
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1764
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1764_212 | HRGMv2_1764_212_3 | 1638 | 2912 | - | 2.A.1.25.3 |
| pfam | HRGMv2_1764_212 | HRGMv2_1764_212_4 | 2993 | 4009 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NmrA | NAD_binding_4 | KR | GDP_Man_Dehyd |
| TC | HRGMv2_1764_212 | HRGMv2_1764_212_5 | 4214 | 7447 | + | 1.B.12.5.3 |
| CAZyme | HRGMv2_1764_212 | HRGMv2_1764_212_6 | 7500 | 8327 | - | CE1 |
Gene ID: HRGMv2_1764_212_3
Type: TC
Location: 1638 - 2912 (-)
Type: TC
Location: 1638 - 2912 (-)
Gene ID: HRGMv2_1764_212_4
Type: pfam
Location: 2993 - 4009 (-)
Type: pfam
Location: 2993 - 4009 (-)
Gene ID: HRGMv2_1764_212_5
Type: TC
Location: 4214 - 7447 (+)
Type: TC
Location: 4214 - 7447 (+)
Gene ID: HRGMv2_1764_212_6
Type: CAZyme
Location: 7500 - 8327 (-)
Type: CAZyme
Location: 7500 - 8327 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_K
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.