Cluster: HRGMv2_1764_CGC15
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1764
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1764_207 | HRGMv2_1764_207_3 | 1979 | 2236 | + | 8.A.8.1.1 |
| TC | HRGMv2_1764_207 | HRGMv2_1764_207_4 | 2316 | 4067 | + | 8.A.7.1.1 |
| TC | HRGMv2_1764_207 | HRGMv2_1764_207_5 | 4127 | 4627 | + | 4.A.1.1.1 |
| pfam | HRGMv2_1764_207 | HRGMv2_1764_207_6 | 4701 | 5900 | + | PMI_typeI_cat | MPI_cupin_dom |
| CAZyme | HRGMv2_1764_207 | HRGMv2_1764_207_7 | 6022 | 9048 | + | GH2 |
Gene ID: HRGMv2_1764_207_3
Type: TC
Location: 1979 - 2236 (+)
Type: TC
Location: 1979 - 2236 (+)
Gene ID: HRGMv2_1764_207_4
Type: TC
Location: 2316 - 4067 (+)
Type: TC
Location: 2316 - 4067 (+)
Gene ID: HRGMv2_1764_207_5
Type: TC
Location: 4127 - 4627 (+)
Type: TC
Location: 4127 - 4627 (+)
Gene ID: HRGMv2_1764_207_6
Type: pfam
Location: 4701 - 5900 (+)
Type: pfam
Location: 4701 - 5900 (+)
Gene ID: HRGMv2_1764_207_7
Type: CAZyme
Location: 6022 - 9048 (+)
Type: CAZyme
Location: 6022 - 9048 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_K
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1764_207_5 | vegan > omnivore | 3.53917 | 0.03728 |
| HRGMv2_1764_207_5 | vegetarian > omnivore | 1.90588 | 0.00711 |