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Cluster: HRGMv2_1764_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1764_165 HRGMv2_1764_165_8 6642 7883 - GT2
CAZyme HRGMv2_1764_165 HRGMv2_1764_165_9 7893 8819 - GH153
CAZyme HRGMv2_1764_165 HRGMv2_1764_165_10 8919 9809 - CE4
TC HRGMv2_1764_165 HRGMv2_1764_165_11 9831 12248 - 1.B.55.1.3
TC HRGMv2_1764_165 HRGMv2_1764_165_12 12455 13222 - 3.A.1.14.8
TC HRGMv2_1764_165 HRGMv2_1764_165_13 13222 14205 - 3.A.1.14.1
TC HRGMv2_1764_165 HRGMv2_1764_165_14 14205 15194 - 3.A.1.14.1
TC HRGMv2_1764_165 HRGMv2_1764_165_15 15194 16084 - 3.A.1.14.1
Gene ID: HRGMv2_1764_165_8
Type: CAZyme
Location: 6642 - 7883 (-)
Gene ID: HRGMv2_1764_165_9
Type: CAZyme
Location: 7893 - 8819 (-)
Gene ID: HRGMv2_1764_165_10
Type: CAZyme
Location: 8919 - 9809 (-)
Gene ID: HRGMv2_1764_165_11
Type: TC
Location: 9831 - 12248 (-)
Gene ID: HRGMv2_1764_165_12
Type: TC
Location: 12455 - 13222 (-)
Gene ID: HRGMv2_1764_165_13
Type: TC
Location: 13222 - 14205 (-)
Gene ID: HRGMv2_1764_165_14
Type: TC
Location: 14205 - 15194 (-)
Gene ID: HRGMv2_1764_165_15
Type: TC
Location: 15194 - 16084 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1764_165_14 vegetarian > omnivore 1.67340 0.00711
HRGMv2_1764_165_15 vegetarian > omnivore 1.53067 0.00711

🧭 Explore Read Mapping of CGC

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