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Cluster: HRGMv2_1764_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1764_160 HRGMv2_1764_160_20 14889 15659 - 3.D.10.1.4
TC HRGMv2_1764_160 HRGMv2_1764_160_21 15652 17451 - 3.D.10.1.4
pfam HRGMv2_1764_160 HRGMv2_1764_160_22 17730 18362 + tRNA-synt_2
pfam HRGMv2_1764_160 HRGMv2_1764_160_23 18448 18732 + tRNA-synt_2
TC HRGMv2_1764_160 HRGMv2_1764_160_24 19045 20088 + 1.B.1.3.1
pfam HRGMv2_1764_160 HRGMv2_1764_160_25 20310 21281 - Ferrochelatase
pfam HRGMv2_1764_160 HRGMv2_1764_160_26 21278 21697 - 4HBT
TC HRGMv2_1764_160 HRGMv2_1764_160_27 22097 28270 + 1.B.40.2.2
NULL(UNKNOWN) HRGMv2_1764_160 HRGMv2_1764_160_28 28403 28558 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1764_160 HRGMv2_1764_160_29 28533 29264 + GT8
Gene ID: HRGMv2_1764_160_20
Type: TC
Location: 14889 - 15659 (-)
Gene ID: HRGMv2_1764_160_21
Type: TC
Location: 15652 - 17451 (-)
Gene ID: HRGMv2_1764_160_22
Type: pfam
Location: 17730 - 18362 (+)
Gene ID: HRGMv2_1764_160_23
Type: pfam
Location: 18448 - 18732 (+)
Gene ID: HRGMv2_1764_160_24
Type: TC
Location: 19045 - 20088 (+)
Gene ID: HRGMv2_1764_160_25
Type: pfam
Location: 20310 - 21281 (-)
Gene ID: HRGMv2_1764_160_26
Type: pfam
Location: 21278 - 21697 (-)
Gene ID: HRGMv2_1764_160_27
Type: TC
Location: 22097 - 28270 (+)
Gene ID: HRGMv2_1764_160_28
Type:
Location: 28403 - 28558 (+)
Gene ID: HRGMv2_1764_160_29
Type: CAZyme
Location: 28533 - 29264 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1764_160_21 vegetarian > omnivore 1.95385 0.00711
HRGMv2_1764_160_23 vegan > omnivore 1.35434 0.03728
HRGMv2_1764_160_23 vegetarian > omnivore 1.27037 0.00711

🧭 Explore Read Mapping of CGC

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