Cluster: HRGMv2_1764_CGC10
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1764
- CGC Family ID: CGCFAM_04486
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1764_148 | HRGMv2_1764_148_8 | 7882 | 9252 | + | 2.A.25.1.4 |
| pfam | HRGMv2_1764_148 | HRGMv2_1764_148_9 | 9494 | 9817 | + | Ribosomal_S30AE |
| NULL(UNKNOWN) | HRGMv2_1764_148 | HRGMv2_1764_148_10 | 9863 | 10006 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1764_148 | HRGMv2_1764_148_11 | 10063 | 10956 | - | GH23 |
Gene ID: HRGMv2_1764_148_8
Type: TC
Location: 7882 - 9252 (+)
Type: TC
Location: 7882 - 9252 (+)
Gene ID: HRGMv2_1764_148_9
Type: pfam
Location: 9494 - 9817 (+)
Type: pfam
Location: 9494 - 9817 (+)
Gene ID: HRGMv2_1764_148_10
Type:
Location: 9863 - 10006 (-)
Type:
Location: 9863 - 10006 (-)
Gene ID: HRGMv2_1764_148_11
Type: CAZyme
Location: 10063 - 10956 (-)
Type: CAZyme
Location: 10063 - 10956 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_K
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1764_148_10 | vegan > omnivore | 1.05015 | 0.03728 |
| HRGMv2_1764_148_10 | vegetarian > omnivore | 1.94361 | 0.00711 |
| HRGMv2_1764_148_11 | vegan > omnivore | 1.08545 | 0.03728 |
| HRGMv2_1764_148_11 | vegetarian > omnivore | 2.33310 | 0.00711 |
| HRGMv2_1764_148_11 | vegetarian > vegan | 1.24765 | 0.04370 |