Cluster: HRGMv2_1764_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1764
- CGC Family ID: CGCFAM_03481
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1764_8 | HRGMv2_1764_8_4 | 3244 | 3822 | + | GT9 |
| CAZyme | HRGMv2_1764_8 | HRGMv2_1764_8_5 | 3794 | 4291 | + | GT9 |
| TC | HRGMv2_1764_8 | HRGMv2_1764_8_6 | 4241 | 4906 | - | 2.A.115.2.7 |
| pfam | HRGMv2_1764_8 | HRGMv2_1764_8_7 | 5097 | 6638 | + | PFL-like | YjjI-like |
| TC | HRGMv2_1764_8 | HRGMv2_1764_8_8 | 6681 | 7694 | - | 2.A.16.2.2 |
Gene ID: HRGMv2_1764_8_4
Type: CAZyme
Location: 3244 - 3822 (+)
Type: CAZyme
Location: 3244 - 3822 (+)
Gene ID: HRGMv2_1764_8_5
Type: CAZyme
Location: 3794 - 4291 (+)
Type: CAZyme
Location: 3794 - 4291 (+)
Gene ID: HRGMv2_1764_8_6
Type: TC
Location: 4241 - 4906 (-)
Type: TC
Location: 4241 - 4906 (-)
Gene ID: HRGMv2_1764_8_7
Type: pfam
Location: 5097 - 6638 (+)
Type: pfam
Location: 5097 - 6638 (+)
Gene ID: HRGMv2_1764_8_8
Type: TC
Location: 6681 - 7694 (-)
Type: TC
Location: 6681 - 7694 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_K
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1764_8_5 | vegan > omnivore | 1.09413 | 0.03728 |
| HRGMv2_1764_8_6 | vegan > omnivore | 1.28610 | 0.03728 |
| HRGMv2_1764_8_6 | vegetarian > omnivore | 1.49179 | 0.00711 |