Cluster: HRGMv2_1763_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1763
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1763_1 | HRGMv2_1763_1_268 | 263222 | 264592 | + | 2.A.25.1.4 |
| pfam | HRGMv2_1763_1 | HRGMv2_1763_1_269 | 264834 | 265157 | + | Ribosomal_S30AE |
| NULL(UNKNOWN) | HRGMv2_1763_1 | HRGMv2_1763_1_270 | 265204 | 265347 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1763_1 | HRGMv2_1763_1_271 | 265403 | 266797 | - | GH23 |
| TC | HRGMv2_1763_1 | HRGMv2_1763_1_272 | 266893 | 268731 | - | 3.A.18.1.1 |
Gene ID: HRGMv2_1763_1_268
Type: TC
Location: 263222 - 264592 (+)
Type: TC
Location: 263222 - 264592 (+)
Gene ID: HRGMv2_1763_1_269
Type: pfam
Location: 264834 - 265157 (+)
Type: pfam
Location: 264834 - 265157 (+)
Gene ID: HRGMv2_1763_1_270
Type:
Location: 265204 - 265347 (-)
Type:
Location: 265204 - 265347 (-)
Gene ID: HRGMv2_1763_1_271
Type: CAZyme
Location: 265403 - 266797 (-)
Type: CAZyme
Location: 265403 - 266797 (-)
Gene ID: HRGMv2_1763_1_272
Type: TC
Location: 266893 - 268731 (-)
Type: TC
Location: 266893 - 268731 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1763_1_270 | vegan > omnivore | 1.12496 | 0.00749 |
| HRGMv2_1763_1_270 | vegetarian > omnivore | 1.71350 | 0.01681 |
| HRGMv2_1763_1_271 | vegetarian > omnivore | 1.54111 | 0.01681 |