Cluster: HRGMv2_1763_CGC7
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1763
- CGC Family ID: CGCFAM_01707
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1763_1 | HRGMv2_1763_1_210 | 203953 | 205782 | + | 2.A.37.1.10 |
| pfam | HRGMv2_1763_1 | HRGMv2_1763_1_211 | 205827 | 206552 | - | RIO1 | APH | Kdo |
| CAZyme | HRGMv2_1763_1 | HRGMv2_1763_1_212 | 206630 | 207685 | + | GT9 |
Gene ID: HRGMv2_1763_1_210
Type: TC
Location: 203953 - 205782 (+)
Type: TC
Location: 203953 - 205782 (+)
Gene ID: HRGMv2_1763_1_211
Type: pfam
Location: 205827 - 206552 (-)
Type: pfam
Location: 205827 - 206552 (-)
Gene ID: HRGMv2_1763_1_212
Type: CAZyme
Location: 206630 - 207685 (+)
Type: CAZyme
Location: 206630 - 207685 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1763_1_212 | vegetarian > vegan | 1.13522 | 0.04052 |