Cluster: HRGMv2_1763_CGC5
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1763
- CGC Family ID: CGCFAM_01420
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1763_1 | HRGMv2_1763_1_158 | 148733 | 149668 | - | GT2 |
| peptidase | HRGMv2_1763_1 | HRGMv2_1763_1_159 | 149791 | 151428 | - | C26.964 |
| pfam | HRGMv2_1763_1 | HRGMv2_1763_1_160 | 151687 | 153057 | + | Hexapep | Hexapep | NTP_transferase | IspD | NTP_transf_3 | Hexapep_2 |
| TC | HRGMv2_1763_1 | HRGMv2_1763_1_161 | 153174 | 153665 | + | 9.B.105.1.1 |
Gene ID: HRGMv2_1763_1_158
Type: CAZyme
Location: 148733 - 149668 (-)
Type: CAZyme
Location: 148733 - 149668 (-)
Gene ID: HRGMv2_1763_1_159
Type: peptidase
Location: 149791 - 151428 (-)
Type: peptidase
Location: 149791 - 151428 (-)
Gene ID: HRGMv2_1763_1_160
Type: pfam
Location: 151687 - 153057 (+)
Type: pfam
Location: 151687 - 153057 (+)
Gene ID: HRGMv2_1763_1_161
Type: TC
Location: 153174 - 153665 (+)
Type: TC
Location: 153174 - 153665 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1763_1_159 | vegan > omnivore | 1.71158 | 0.00749 |
| HRGMv2_1763_1_161 | vegan > omnivore | 1.19216 | 0.00749 |
| HRGMv2_1763_1_161 | vegetarian > omnivore | 1.10138 | 0.01681 |