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Cluster: HRGMv2_1763_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1763_1 HRGMv2_1763_1_128 111573 113099 - 2.A.1.3.2
TC HRGMv2_1763_1 HRGMv2_1763_1_129 113309 114277 - 8.A.1.1.1
TC HRGMv2_1763_1 HRGMv2_1763_1_130 114682 117717 + 1.B.40.2.2
TC HRGMv2_1763_1 HRGMv2_1763_1_131 117872 118492 + 1.B.40.1.5
pfam HRGMv2_1763_1 HRGMv2_1763_1_132 118625 119764 + DUF2827
CAZyme HRGMv2_1763_1 HRGMv2_1763_1_133 119856 121388 - GT2
TC HRGMv2_1763_1 HRGMv2_1763_1_134 121397 122584 - 2.A.33.1.2
TC HRGMv2_1763_1 HRGMv2_1763_1_135 122787 124088 + 2.A.26.1.1
Gene ID: HRGMv2_1763_1_128
Type: TC
Location: 111573 - 113099 (-)
Gene ID: HRGMv2_1763_1_129
Type: TC
Location: 113309 - 114277 (-)
Gene ID: HRGMv2_1763_1_130
Type: TC
Location: 114682 - 117717 (+)
Gene ID: HRGMv2_1763_1_131
Type: TC
Location: 117872 - 118492 (+)
Gene ID: HRGMv2_1763_1_132
Type: pfam
Location: 118625 - 119764 (+)
Gene ID: HRGMv2_1763_1_133
Type: CAZyme
Location: 119856 - 121388 (-)
Gene ID: HRGMv2_1763_1_134
Type: TC
Location: 121397 - 122584 (-)
Gene ID: HRGMv2_1763_1_135
Type: TC
Location: 122787 - 124088 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1763_1_128 vegan > omnivore 1.69950 0.00749
HRGMv2_1763_1_128 vegetarian > omnivore 1.20332 0.01681

🧭 Explore Read Mapping of CGC

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