Cluster: HRGMv2_1763_CGC3
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1763
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1763_1 | HRGMv2_1763_1_96 | 72957 | 74198 | - | GT2 |
| CAZyme | HRGMv2_1763_1 | HRGMv2_1763_1_97 | 74208 | 76124 | - | CE4 | GH153 |
| TC | HRGMv2_1763_1 | HRGMv2_1763_1_98 | 76146 | 78563 | - | 1.B.55.1.3 |
| TC | HRGMv2_1763_1 | HRGMv2_1763_1_99 | 78774 | 79541 | - | 3.A.1.14.8 |
| TC | HRGMv2_1763_1 | HRGMv2_1763_1_100 | 79541 | 80524 | - | 3.A.1.14.1 |
| TC | HRGMv2_1763_1 | HRGMv2_1763_1_101 | 80524 | 81513 | - | 3.A.1.14.1 |
| TC | HRGMv2_1763_1 | HRGMv2_1763_1_102 | 81513 | 82403 | - | 3.A.1.14.1 |
Gene ID: HRGMv2_1763_1_96
Type: CAZyme
Location: 72957 - 74198 (-)
Type: CAZyme
Location: 72957 - 74198 (-)
Gene ID: HRGMv2_1763_1_97
Type: CAZyme
Location: 74208 - 76124 (-)
Type: CAZyme
Location: 74208 - 76124 (-)
Gene ID: HRGMv2_1763_1_98
Type: TC
Location: 76146 - 78563 (-)
Type: TC
Location: 76146 - 78563 (-)
Gene ID: HRGMv2_1763_1_99
Type: TC
Location: 78774 - 79541 (-)
Type: TC
Location: 78774 - 79541 (-)
Gene ID: HRGMv2_1763_1_100
Type: TC
Location: 79541 - 80524 (-)
Type: TC
Location: 79541 - 80524 (-)
Gene ID: HRGMv2_1763_1_101
Type: TC
Location: 80524 - 81513 (-)
Type: TC
Location: 80524 - 81513 (-)
Gene ID: HRGMv2_1763_1_102
Type: TC
Location: 81513 - 82403 (-)
Type: TC
Location: 81513 - 82403 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1763_1_101 | vegetarian > omnivore | 1.47311 | 0.01681 |
| HRGMv2_1763_1_102 | vegetarian > omnivore | 1.51202 | 0.01681 |