Cluster: HRGMv2_1763_CGC23
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1763
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1763_17 | HRGMv2_1763_17_9 | 8012 | 10030 | - | GT41 |
| pfam | HRGMv2_1763_17 | HRGMv2_1763_17_10 | 10070 | 11407 | - | UPF0004 | Radical_SAM | TRAM_2 |
| TC | HRGMv2_1763_17 | HRGMv2_1763_17_11 | 11536 | 12192 | + | 9.B.20.2.2 |
Gene ID: HRGMv2_1763_17_9
Type: CAZyme
Location: 8012 - 10030 (-)
Type: CAZyme
Location: 8012 - 10030 (-)
Gene ID: HRGMv2_1763_17_10
Type: pfam
Location: 10070 - 11407 (-)
Type: pfam
Location: 10070 - 11407 (-)
Gene ID: HRGMv2_1763_17_11
Type: TC
Location: 11536 - 12192 (+)
Type: TC
Location: 11536 - 12192 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1763_17_11 | vegetarian > omnivore | 1.51466 | 0.01681 |