Cluster: HRGMv2_1763_CGC22
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1763
- CGC Family ID: CGCFAM_01473
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1763_14 | HRGMv2_1763_14_15 | 13268 | 14380 | + | 3.A.1.132.3 |
| pfam | HRGMv2_1763_14 | HRGMv2_1763_14_16 | 14454 | 15083 | - | His_Phos_1 |
| TC | HRGMv2_1763_14 | HRGMv2_1763_14_17 | 15137 | 16504 | - | 1.B.17.3.7 |
| TC | HRGMv2_1763_14 | HRGMv2_1763_14_18 | 16589 | 18520 | - | 3.A.1.122.12 |
| TC | HRGMv2_1763_14 | HRGMv2_1763_14_19 | 18539 | 19720 | - | 3.A.1.122.12 |
| pfam | HRGMv2_1763_14 | HRGMv2_1763_14_20 | 19944 | 21617 | + | tRNA-synt_1c | tRNA-synt_1c_C | tRNA-synt_1c_C2 |
| pfam | HRGMv2_1763_14 | HRGMv2_1763_14_21 | 21684 | 22124 | + | CxxCxxCC |
| CAZyme | HRGMv2_1763_14 | HRGMv2_1763_14_22 | 22269 | 24359 | + | GH77 |
| CAZyme | HRGMv2_1763_14 | HRGMv2_1763_14_23 | 24371 | 26560 | + | CBM48 | GH13_9 |
| CAZyme | HRGMv2_1763_14 | HRGMv2_1763_14_24 | 26578 | 28569 | + | GH13_11 |
Gene ID: HRGMv2_1763_14_15
Type: TC
Location: 13268 - 14380 (+)
Type: TC
Location: 13268 - 14380 (+)
Gene ID: HRGMv2_1763_14_16
Type: pfam
Location: 14454 - 15083 (-)
Type: pfam
Location: 14454 - 15083 (-)
Gene ID: HRGMv2_1763_14_17
Type: TC
Location: 15137 - 16504 (-)
Type: TC
Location: 15137 - 16504 (-)
Gene ID: HRGMv2_1763_14_18
Type: TC
Location: 16589 - 18520 (-)
Type: TC
Location: 16589 - 18520 (-)
Gene ID: HRGMv2_1763_14_19
Type: TC
Location: 18539 - 19720 (-)
Type: TC
Location: 18539 - 19720 (-)
Gene ID: HRGMv2_1763_14_20
Type: pfam
Location: 19944 - 21617 (+)
Type: pfam
Location: 19944 - 21617 (+)
Gene ID: HRGMv2_1763_14_21
Type: pfam
Location: 21684 - 22124 (+)
Type: pfam
Location: 21684 - 22124 (+)
Gene ID: HRGMv2_1763_14_22
Type: CAZyme
Location: 22269 - 24359 (+)
Type: CAZyme
Location: 22269 - 24359 (+)
Gene ID: HRGMv2_1763_14_23
Type: CAZyme
Location: 24371 - 26560 (+)
Type: CAZyme
Location: 24371 - 26560 (+)
Gene ID: HRGMv2_1763_14_24
Type: CAZyme
Location: 26578 - 28569 (+)
Type: CAZyme
Location: 26578 - 28569 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1763_14_15 | vegan > omnivore | 1.44949 | 0.00749 |
| HRGMv2_1763_14_17 | vegan > omnivore | 1.08470 | 0.00749 |
| HRGMv2_1763_14_17 | vegetarian > omnivore | 1.18630 | 0.01681 |
| HRGMv2_1763_14_21 | vegetarian > omnivore | 1.14217 | 0.01681 |