Cluster: HRGMv2_1763_CGC2
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1763
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1763_1 | HRGMv2_1763_1_88 | 64631 | 65674 | + | GT9 |
| TC | HRGMv2_1763_1 | HRGMv2_1763_1_89 | 65671 | 66576 | + | 2.A.7.3.58 |
| CAZyme | HRGMv2_1763_1 | HRGMv2_1763_1_90 | 66573 | 67526 | + | GT9 |
| TC | HRGMv2_1763_1 | HRGMv2_1763_1_91 | 67971 | 68771 | + | 1.B.1.3.3 |
Gene ID: HRGMv2_1763_1_88
Type: CAZyme
Location: 64631 - 65674 (+)
Type: CAZyme
Location: 64631 - 65674 (+)
Gene ID: HRGMv2_1763_1_89
Type: TC
Location: 65671 - 66576 (+)
Type: TC
Location: 65671 - 66576 (+)
Gene ID: HRGMv2_1763_1_90
Type: CAZyme
Location: 66573 - 67526 (+)
Type: CAZyme
Location: 66573 - 67526 (+)
Gene ID: HRGMv2_1763_1_91
Type: TC
Location: 67971 - 68771 (+)
Type: TC
Location: 67971 - 68771 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1763_1_90 | vegan > omnivore | 1.01287 | 0.00749 |
| HRGMv2_1763_1_90 | vegetarian > omnivore | 1.33132 | 0.01681 |