Cluster: HRGMv2_1763_CGC19
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1763
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1763_9 | HRGMv2_1763_9_3 | 772 | 1077 | + | 9.B.21.2.1 |
| TC | HRGMv2_1763_9 | HRGMv2_1763_9_4 | 1077 | 2942 | + | 2.A.16.2.2 |
| pfam | HRGMv2_1763_9 | HRGMv2_1763_9_5 | 2985 | 4526 | - | PFL-like | YjjI-like |
| TC | HRGMv2_1763_9 | HRGMv2_1763_9_6 | 4717 | 5382 | + | 2.A.115.2.7 |
| CAZyme | HRGMv2_1763_9 | HRGMv2_1763_9_7 | 5332 | 6360 | - | GT9 |
Gene ID: HRGMv2_1763_9_3
Type: TC
Location: 772 - 1077 (+)
Type: TC
Location: 772 - 1077 (+)
Gene ID: HRGMv2_1763_9_4
Type: TC
Location: 1077 - 2942 (+)
Type: TC
Location: 1077 - 2942 (+)
Gene ID: HRGMv2_1763_9_5
Type: pfam
Location: 2985 - 4526 (-)
Type: pfam
Location: 2985 - 4526 (-)
Gene ID: HRGMv2_1763_9_6
Type: TC
Location: 4717 - 5382 (+)
Type: TC
Location: 4717 - 5382 (+)
Gene ID: HRGMv2_1763_9_7
Type: CAZyme
Location: 5332 - 6360 (-)
Type: CAZyme
Location: 5332 - 6360 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1763_9_6 | vegan > omnivore | 1.28368 | 0.00749 |
| HRGMv2_1763_9_6 | vegetarian > omnivore | 1.24053 | 0.01681 |
| HRGMv2_1763_9_7 | vegan > omnivore | 1.45627 | 0.00749 |
| HRGMv2_1763_9_7 | vegetarian > omnivore | 1.07106 | 0.01681 |