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Cluster: HRGMv2_1763_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1763_7 HRGMv2_1763_7_20 20394 21167 - 3.A.1.14.19
TC HRGMv2_1763_7 HRGMv2_1763_7_21 21167 22216 - 3.A.1.14.5
STP HRGMv2_1763_7 HRGMv2_1763_7_22 22232 23347 - Peripla_BP_2
pfam HRGMv2_1763_7 HRGMv2_1763_7_23 23447 24586 - Cytochrom_C | CCP_MauG
CAZyme HRGMv2_1763_7 HRGMv2_1763_7_24 24667 25785 - GH103
CAZyme HRGMv2_1763_7 HRGMv2_1763_7_25 25819 26622 - GT2
CAZyme HRGMv2_1763_7 HRGMv2_1763_7_26 27040 27921 - GT2
NULL(UNKNOWN) HRGMv2_1763_7 HRGMv2_1763_7_27 27914 29113 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1763_7 HRGMv2_1763_7_28 29121 29891 - GT25
Gene ID: HRGMv2_1763_7_20
Type: TC
Location: 20394 - 21167 (-)
Gene ID: HRGMv2_1763_7_21
Type: TC
Location: 21167 - 22216 (-)
Gene ID: HRGMv2_1763_7_22
Type: STP
Location: 22232 - 23347 (-)
Gene ID: HRGMv2_1763_7_23
Type: pfam
Location: 23447 - 24586 (-)
Gene ID: HRGMv2_1763_7_24
Type: CAZyme
Location: 24667 - 25785 (-)
Gene ID: HRGMv2_1763_7_25
Type: CAZyme
Location: 25819 - 26622 (-)
Gene ID: HRGMv2_1763_7_26
Type: CAZyme
Location: 27040 - 27921 (-)
Gene ID: HRGMv2_1763_7_27
Type:
Location: 27914 - 29113 (-)
Gene ID: HRGMv2_1763_7_28
Type: CAZyme
Location: 29121 - 29891 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1763_7_22 vegan > omnivore 1.79084 0.00749
HRGMv2_1763_7_22 vegetarian > omnivore 1.17218 0.01681
HRGMv2_1763_7_26 vegetarian > omnivore 2.26374 0.01681

🧭 Explore Read Mapping of CGC

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