Cluster: HRGMv2_1763_CGC17
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1763
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1763_7 | HRGMv2_1763_7_7 | 7347 | 9746 | + | GT51 |
| TC | HRGMv2_1763_7 | HRGMv2_1763_7_8 | 9965 | 11869 | + | 2.A.108.2.10 |
| TC | HRGMv2_1763_7 | HRGMv2_1763_7_9 | 11898 | 12419 | + | 2.A.108.2.10 |
| pfam | HRGMv2_1763_7 | HRGMv2_1763_7_10 | 12535 | 13929 | + | YHS | FtrD-like |
| TC | HRGMv2_1763_7 | HRGMv2_1763_7_11 | 13929 | 15269 | + | 3.A.1.122.8 |
| pfam | HRGMv2_1763_7 | HRGMv2_1763_7_12 | 15256 | 16389 | + | FtsX | MacB_PCD |
| TC | HRGMv2_1763_7 | HRGMv2_1763_7_13 | 16391 | 17062 | + | 3.A.1.122.8 |
Gene ID: HRGMv2_1763_7_7
Type: CAZyme
Location: 7347 - 9746 (+)
Type: CAZyme
Location: 7347 - 9746 (+)
Gene ID: HRGMv2_1763_7_8
Type: TC
Location: 9965 - 11869 (+)
Type: TC
Location: 9965 - 11869 (+)
Gene ID: HRGMv2_1763_7_9
Type: TC
Location: 11898 - 12419 (+)
Type: TC
Location: 11898 - 12419 (+)
Gene ID: HRGMv2_1763_7_10
Type: pfam
Location: 12535 - 13929 (+)
Type: pfam
Location: 12535 - 13929 (+)
Gene ID: HRGMv2_1763_7_11
Type: TC
Location: 13929 - 15269 (+)
Type: TC
Location: 13929 - 15269 (+)
Gene ID: HRGMv2_1763_7_12
Type: pfam
Location: 15256 - 16389 (+)
Type: pfam
Location: 15256 - 16389 (+)
Gene ID: HRGMv2_1763_7_13
Type: TC
Location: 16391 - 17062 (+)
Type: TC
Location: 16391 - 17062 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1763_7_8 | vegetarian > vegan | 1.16328 | 0.03559 |
| HRGMv2_1763_7_10 | vegetarian > vegan | 1.72237 | 0.02445 |