Cluster: HRGMv2_1763_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1763
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1763_3 | HRGMv2_1763_3_83 | 82876 | 84003 | + | GH102 |
| pfam | HRGMv2_1763_3 | HRGMv2_1763_3_84 | 84003 | 84764 | + | ThiF |
| TC | HRGMv2_1763_3 | HRGMv2_1763_3_85 | 84933 | 85913 | + | 3.A.1.15.5 |
| pfam | HRGMv2_1763_3 | HRGMv2_1763_3_86 | 86205 | 88340 | + | UPF0020 | THUMP | Cons_hypoth95 | Methyltrans_SAM | RlmL_1st |
| TC | HRGMv2_1763_3 | HRGMv2_1763_3_87 | 88375 | 90279 | - | 2.A.37.1.2 |
Gene ID: HRGMv2_1763_3_83
Type: CAZyme
Location: 82876 - 84003 (+)
Type: CAZyme
Location: 82876 - 84003 (+)
Gene ID: HRGMv2_1763_3_84
Type: pfam
Location: 84003 - 84764 (+)
Type: pfam
Location: 84003 - 84764 (+)
Gene ID: HRGMv2_1763_3_85
Type: TC
Location: 84933 - 85913 (+)
Type: TC
Location: 84933 - 85913 (+)
Gene ID: HRGMv2_1763_3_86
Type: pfam
Location: 86205 - 88340 (+)
Type: pfam
Location: 86205 - 88340 (+)
Gene ID: HRGMv2_1763_3_87
Type: TC
Location: 88375 - 90279 (-)
Type: TC
Location: 88375 - 90279 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1763_3_83 | vegetarian > omnivore | 1.09506 | 0.01681 |
| HRGMv2_1763_3_84 | vegan > omnivore | 1.49510 | 0.00749 |
| HRGMv2_1763_3_84 | vegetarian > omnivore | 1.48117 | 0.01681 |
| HRGMv2_1763_3_86 | vegan > omnivore | 1.39328 | 0.00749 |
| HRGMv2_1763_3_86 | vegetarian > omnivore | 1.34595 | 0.01681 |
| HRGMv2_1763_3_87 | vegetarian > omnivore | 1.02665 | 0.01681 |