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Cluster: HRGMv2_1763_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1763_2 HRGMv2_1763_2_149 157278 159533 - 1.B.14.1.3
TC HRGMv2_1763_2 HRGMv2_1763_2_150 159783 160490 + 2.A.88.8.6
TC HRGMv2_1763_2 HRGMv2_1763_2_151 160505 161821 + 2.A.1.15.11
peptidase HRGMv2_1763_2 HRGMv2_1763_2_152 162042 162869 + C44.UPW
STP HRGMv2_1763_2 HRGMv2_1763_2_153 162937 164307 - Pyr_redox_2
CAZyme HRGMv2_1763_2 HRGMv2_1763_2_154 164527 165654 + GT2
pfam HRGMv2_1763_2 HRGMv2_1763_2_155 165689 165880 + Glyco_tranf_2_4
NULL(UNKNOWN) HRGMv2_1763_2 HRGMv2_1763_2_156 165915 166664 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1763_2 HRGMv2_1763_2_157 166696 167523 - GT8
TC HRGMv2_1763_2 HRGMv2_1763_2_158 167679 169913 - 1.B.40.1.5
Gene ID: HRGMv2_1763_2_149
Type: TC
Location: 157278 - 159533 (-)
Gene ID: HRGMv2_1763_2_150
Type: TC
Location: 159783 - 160490 (+)
Gene ID: HRGMv2_1763_2_151
Type: TC
Location: 160505 - 161821 (+)
Gene ID: HRGMv2_1763_2_152
Type: peptidase
Location: 162042 - 162869 (+)
Gene ID: HRGMv2_1763_2_153
Type: STP
Location: 162937 - 164307 (-)
Gene ID: HRGMv2_1763_2_154
Type: CAZyme
Location: 164527 - 165654 (+)
Gene ID: HRGMv2_1763_2_155
Type: pfam
Location: 165689 - 165880 (+)
Gene ID: HRGMv2_1763_2_156
Type:
Location: 165915 - 166664 (+)
Gene ID: HRGMv2_1763_2_157
Type: CAZyme
Location: 166696 - 167523 (-)
Gene ID: HRGMv2_1763_2_158
Type: TC
Location: 167679 - 169913 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1763_2_152 vegan > omnivore 1.80742 0.00749
HRGMv2_1763_2_152 vegetarian > omnivore 1.13089 0.01681

🧭 Explore Read Mapping of CGC

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