Cluster: HRGMv2_1763_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1763
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1763_1 | HRGMv2_1763_1_415 | 413095 | 414138 | + | GH3 |
| pfam | HRGMv2_1763_1 | HRGMv2_1763_1_416 | 414135 | 415307 | + | MTS | tRNA_U5-meth_tr | Methyltransf_25 | Methyltransf_31 |
| TC | HRGMv2_1763_1 | HRGMv2_1763_1_417 | 415341 | 416174 | - | 3.A.1.15.4 |
| TC | HRGMv2_1763_1 | HRGMv2_1763_1_418 | 416167 | 417018 | - | 3.A.1.15.4 |
| TC | HRGMv2_1763_1 | HRGMv2_1763_1_419 | 417022 | 417918 | - | 3.A.1.15.4 |
| TC | HRGMv2_1763_1 | HRGMv2_1763_1_420 | 417918 | 418799 | - | 3.A.1.15.4 |
Gene ID: HRGMv2_1763_1_415
Type: CAZyme
Location: 413095 - 414138 (+)
Type: CAZyme
Location: 413095 - 414138 (+)
Gene ID: HRGMv2_1763_1_416
Type: pfam
Location: 414135 - 415307 (+)
Type: pfam
Location: 414135 - 415307 (+)
Gene ID: HRGMv2_1763_1_417
Type: TC
Location: 415341 - 416174 (-)
Type: TC
Location: 415341 - 416174 (-)
Gene ID: HRGMv2_1763_1_418
Type: TC
Location: 416167 - 417018 (-)
Type: TC
Location: 416167 - 417018 (-)
Gene ID: HRGMv2_1763_1_419
Type: TC
Location: 417022 - 417918 (-)
Type: TC
Location: 417022 - 417918 (-)
Gene ID: HRGMv2_1763_1_420
Type: TC
Location: 417918 - 418799 (-)
Type: TC
Location: 417918 - 418799 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1763_1_416 | vegan > omnivore | 1.33082 | 0.00749 |
| HRGMv2_1763_1_416 | vegetarian > omnivore | 1.13879 | 0.01681 |
| HRGMv2_1763_1_417 | vegan > omnivore | 2.22780 | 0.00749 |
| HRGMv2_1763_1_417 | vegetarian > omnivore | 1.26381 | 0.01681 |
| HRGMv2_1763_1_418 | vegan > omnivore | 2.33494 | 0.00749 |
| HRGMv2_1763_1_418 | vegetarian > omnivore | 1.25207 | 0.01681 |