Cluster: HRGMv2_1763_CGC1
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1763
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1763_1 | HRGMv2_1763_1_4 | 3038 | 3853 | + | GT2 |
| TC | HRGMv2_1763_1 | HRGMv2_1763_1_5 | 3850 | 5226 | + | 2.A.38.1.1 |
| TC | HRGMv2_1763_1 | HRGMv2_1763_1_6 | 5305 | 5688 | + | 1.A.22.1.1 |
Gene ID: HRGMv2_1763_1_4
Type: CAZyme
Location: 3038 - 3853 (+)
Type: CAZyme
Location: 3038 - 3853 (+)
Gene ID: HRGMv2_1763_1_5
Type: TC
Location: 3850 - 5226 (+)
Type: TC
Location: 3850 - 5226 (+)
Gene ID: HRGMv2_1763_1_6
Type: TC
Location: 5305 - 5688 (+)
Type: TC
Location: 5305 - 5688 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1763_1_4 | vegan > omnivore | 1.69942 | 0.00749 |
| HRGMv2_1763_1_4 | vegetarian > omnivore | 1.04838 | 0.01681 |
| HRGMv2_1763_1_5 | vegetarian > omnivore | 1.34805 | 0.00460 |
| HRGMv2_1763_1_6 | vegan > omnivore | 1.81273 | 0.00749 |
| HRGMv2_1763_1_6 | vegetarian > omnivore | 3.10175 | 0.01681 |