Cluster: HRGMv2_1762_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1762
- CGC Family ID: CGCFAM_00908
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1762_377 | HRGMv2_1762_377_6 | 3023 | 4084 | + | GH3 |
| pfam | HRGMv2_1762_377 | HRGMv2_1762_377_7 | 4081 | 5253 | + | MTS | tRNA_U5-meth_tr | Methyltransf_31 |
| TC | HRGMv2_1762_377 | HRGMv2_1762_377_8 | 5287 | 6120 | - | 3.A.1.15.4 |
| TC | HRGMv2_1762_377 | HRGMv2_1762_377_9 | 6113 | 6562 | - | 3.A.1.15.4 |
Gene ID: HRGMv2_1762_377_6
Type: CAZyme
Location: 3023 - 4084 (+)
Type: CAZyme
Location: 3023 - 4084 (+)
Gene ID: HRGMv2_1762_377_7
Type: pfam
Location: 4081 - 5253 (+)
Type: pfam
Location: 4081 - 5253 (+)
Gene ID: HRGMv2_1762_377_8
Type: TC
Location: 5287 - 6120 (-)
Type: TC
Location: 5287 - 6120 (-)
Gene ID: HRGMv2_1762_377_9
Type: TC
Location: 6113 - 6562 (-)
Type: TC
Location: 6113 - 6562 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1762_377_7 | vegan > omnivore | 1.40412 | 0.00732 |
| HRGMv2_1762_377_7 | vegetarian > omnivore | 1.22796 | 0.00711 |
| HRGMv2_1762_377_8 | vegan > omnivore | 2.53905 | 0.00732 |
| HRGMv2_1762_377_8 | vegetarian > omnivore | 1.45819 | 0.00711 |
| HRGMv2_1762_377_9 | vegan > omnivore | 3.26175 | 0.00732 |
| HRGMv2_1762_377_9 | vegetarian > omnivore | 1.31877 | 0.00711 |