Cluster: HRGMv2_1762_CGC8
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1762
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1762_348 | HRGMv2_1762_348_2 | 1036 | 2043 | + | GT9 |
| TC | HRGMv2_1762_348 | HRGMv2_1762_348_3 | 2040 | 2945 | + | 2.A.7.3.58 |
| CAZyme | HRGMv2_1762_348 | HRGMv2_1762_348_4 | 2942 | 3895 | + | GT9 |
| TC | HRGMv2_1762_348 | HRGMv2_1762_348_5 | 4054 | 4254 | + | 1.B.1.3.3 |
Gene ID: HRGMv2_1762_348_2
Type: CAZyme
Location: 1036 - 2043 (+)
Type: CAZyme
Location: 1036 - 2043 (+)
Gene ID: HRGMv2_1762_348_3
Type: TC
Location: 2040 - 2945 (+)
Type: TC
Location: 2040 - 2945 (+)
Gene ID: HRGMv2_1762_348_4
Type: CAZyme
Location: 2942 - 3895 (+)
Type: CAZyme
Location: 2942 - 3895 (+)
Gene ID: HRGMv2_1762_348_5
Type: TC
Location: 4054 - 4254 (+)
Type: TC
Location: 4054 - 4254 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1762_348_4 | vegetarian > omnivore | 1.12423 | 0.00711 |