Cluster: HRGMv2_1762_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1762
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1762_311 | HRGMv2_1762_311_5 | 2086 | 4485 | + | GT51 |
| TC | HRGMv2_1762_311 | HRGMv2_1762_311_6 | 4705 | 6609 | + | 2.A.108.2.10 |
| TC | HRGMv2_1762_311 | HRGMv2_1762_311_7 | 6638 | 7159 | + | 2.A.108.2.10 |
| pfam | HRGMv2_1762_311 | HRGMv2_1762_311_8 | 7275 | 8669 | + | YHS | FtrD-like |
| TC | HRGMv2_1762_311 | HRGMv2_1762_311_9 | 8669 | 9934 | + | 3.A.1.122.8 |
Gene ID: HRGMv2_1762_311_5
Type: CAZyme
Location: 2086 - 4485 (+)
Type: CAZyme
Location: 2086 - 4485 (+)
Gene ID: HRGMv2_1762_311_6
Type: TC
Location: 4705 - 6609 (+)
Type: TC
Location: 4705 - 6609 (+)
Gene ID: HRGMv2_1762_311_7
Type: TC
Location: 6638 - 7159 (+)
Type: TC
Location: 6638 - 7159 (+)
Gene ID: HRGMv2_1762_311_8
Type: pfam
Location: 7275 - 8669 (+)
Type: pfam
Location: 7275 - 8669 (+)
Gene ID: HRGMv2_1762_311_9
Type: TC
Location: 8669 - 9934 (+)
Type: TC
Location: 8669 - 9934 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1762_311_6 | vegetarian > vegan | 1.33587 | 0.00747 |
| HRGMv2_1762_311_8 | vegetarian > vegan | 2.07618 | 0.00747 |