Cluster: HRGMv2_1762_CGC5
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1762
- CGC Family ID: CGCFAM_09858
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1762_307 | HRGMv2_1762_307_3 | 1470 | 2456 | - | 3.A.1.15.5 |
| TC | HRGMv2_1762_307 | HRGMv2_1762_307_4 | 2641 | 3402 | - | 3.A.16.1.3 |
| CAZyme | HRGMv2_1762_307 | HRGMv2_1762_307_5 | 3402 | 4529 | - | GH102 |
Gene ID: HRGMv2_1762_307_3
Type: TC
Location: 1470 - 2456 (-)
Type: TC
Location: 1470 - 2456 (-)
Gene ID: HRGMv2_1762_307_4
Type: TC
Location: 2641 - 3402 (-)
Type: TC
Location: 2641 - 3402 (-)
Gene ID: HRGMv2_1762_307_5
Type: CAZyme
Location: 3402 - 4529 (-)
Type: CAZyme
Location: 3402 - 4529 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1762_307_3 | vegan > omnivore | 1.43494 | 0.00732 |
| HRGMv2_1762_307_4 | vegan > omnivore | 1.34390 | 0.00732 |
| HRGMv2_1762_307_4 | vegetarian > omnivore | 1.36623 | 0.00711 |