Cluster: HRGMv2_1762_CGC3
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1762
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1762_45 | HRGMv2_1762_45_4 | 3002 | 3817 | + | GT2 |
| TC | HRGMv2_1762_45 | HRGMv2_1762_45_5 | 3814 | 5190 | + | 2.A.38.1.1 |
| TC | HRGMv2_1762_45 | HRGMv2_1762_45_6 | 5269 | 5655 | + | 1.A.22.1.1 |
Gene ID: HRGMv2_1762_45_4
Type: CAZyme
Location: 3002 - 3817 (+)
Type: CAZyme
Location: 3002 - 3817 (+)
Gene ID: HRGMv2_1762_45_5
Type: TC
Location: 3814 - 5190 (+)
Type: TC
Location: 3814 - 5190 (+)
Gene ID: HRGMv2_1762_45_6
Type: TC
Location: 5269 - 5655 (+)
Type: TC
Location: 5269 - 5655 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1762_45_4 | vegan > omnivore | 1.84508 | 0.00732 |
| HRGMv2_1762_45_4 | vegetarian > omnivore | 1.09081 | 0.00711 |
| HRGMv2_1762_45_6 | vegan > omnivore | 1.58705 | 0.00732 |
| HRGMv2_1762_45_6 | vegetarian > omnivore | 3.50119 | 0.00711 |